Genome sc|0000144


Database

NCBI Assembly

Accession

GCA_009845855.1

Genomics

Accession
NCBI Assembly:GCA_009845855.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.6%
  • Contamination: 3.3%
  • Quality: 79.1
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 68.83%
  • Coding Density: 92.68%
  • Codon Table: 11
  • N50: 56,475 bp
  • Contigs: 120
  • Largest Contig: 158,800 bp
  • Assembly Length: 3,657,233 bp
  • Ambiguous Assembly Fraction: 0.013%
Submitter comments
Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA
Automated checks
Complete

Last modified 4 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2016-10
Location
Lat Lon: 18.49 S 147.38 E
Toponym
Geo Loc Name: Australia: Great Barrier Reef
Environment
Isolation Source: Sponge tissue
Other
Host: Ircinia ramosa
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples

Metadata retrieved 4 days ago

Sequencing Experiments

SB0670_IR4_T3


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