Genome sc|0000144


Database

NCBI Assembly

Accession

GCA_009845855.1

Typification

Nomenclatural type of:

Genomics

Accession
NCBI Assembly:GCA_009845855.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.6%
  • Contamination: 3.3%
  • Quality: 79.1
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 68.83%
  • Coding Density: 92.68%
  • Codon Table: 11
  • N50: 56,475 bp
  • Contigs: 120
  • Largest Contig: 158,800 bp
  • Assembly Length: 3,657,233 bp
  • Ambiguous Assembly Fraction: 0.013%
Submitter comments
Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA
Automated checks
Complete

Last modified almost 2 years ago

Sample Metadata

BioSample entries
Date
Collection Date: 2016-10
Location
Lat Lon: 18° 29′ 24″ S, 147° 22′ 48″ E
View map of sampling locations
Toponym
Geo Loc Name: Australia: Great Barrier Reef
Environment
Isolation Source: Sponge tissue
Other
Host: Ircinia ramosa
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples

Metadata retrieved almost 2 years ago

Sequencing Experiments

SB0670_IR4_T3


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