Palauibacter rhopaloidicola


Citation

Formal styling
Palauibacter rhopaloidicola Aldeguer-Riquelme et al., 2023
Effective publication
Aldeguer-Riquelme et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:0hkazsoc (validated)
Cannonical URL
https://seqco.de/i:23804

Nomenclature

Rank
Species
Syllabication
rho.pa.loi.di'co.la
Etymology
N.L. masc. n. Rhopaloides, name of the sponge genus; L. masc. / fem. n. suff. -cola, inhabitant; N.L. masc. n. rhopaloidicola, inhabitant of Rhopaloides
Nomenclatural type
NCBI Assembly: GCA_947581625.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Classification
Bacteria » Gemmatimonadota » Gemmatimonadetes » Palauibacterales » Palauibacteraceae » Palauibacter » Palauibacter rhopaloidicola
Parent
Palauibacter gtdb

Genomics

Accession
NCBI Assembly:GCA_947581625.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.51%
  • Contamination: 4.4%
  • Quality: 72.51
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 27.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 68.88%
  • Coding Density: 92.72%
  • Codon Table: 11
  • N50: 132,675 bp
  • Contigs: 58
  • Largest Contig: 287,516 bp
  • Assembly Length: 4,078,012 bp
  • Ambiguous Assembly Fraction: 0.013%
Submitter comments
 Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA 
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Aldeguer-Riquelme, Borja over 1 year ago
Submitted by
Aldeguer-Riquelme, Borja over 1 year ago
Curators
Endorsed by
Chuvochina, Maria about 1 year ago
Validated by
Chuvochina, Maria 10 months ago

Publications
1

Citation Title
Aldeguer-Riquelme et al., 2023, mSystems Distribution, abundance, and ecogenomics of the Palauibacterales , a new cosmopolitan thiamine-producing order within the Gemmatimonadota phylum
Effective publication



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