JSON

Genome sc|0001447

Name

Vagococcus giribetii

Database

NCBI Assembly

Accession

GCA_017316185.1

Genomics

Accession
NCBI Assembly:GCA_017316185.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 1.9%
  • Quality: 89.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 11 amino acids
Sequencing depth
103.0 ×
Source
Other features
  • G+C Content: 34.59%
  • Coding Density: 89.61%
  • Codon Table: 11
  • N50: 95,474 bp
  • Contigs: 52
  • Largest Contig: 250,629 bp
  • Assembly Length: 2,728,262 bp
  • Ambiguous Assembly Fraction: 0.036%
Automated checks
Complete
Last modified 4 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2014
Location
Lat Lon: not collected
Toponym
Geo Loc Name: USA
Environment
Isolation Source: water
Other
Not detected
Package
Ncbi Submission Package: Pathogen.cl.1.0
Biosamplemodel: Pathogen.cl
All retrieved samples
Metadata retrieved 4 days ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license