Vagococcus giribetii


Citation

Formal styling
Vagococcus giribetii Schwartzman et al., 2024
Effective publication
Schwartzman et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:csh66vwa (validated)
Cannonical URL
https://seqco.de/i:32958

Nomenclature

Rank
Species
Syllabication
gi.ri.bet'i.i
Etymology
N.L. gen. n. giribetii, of Giribet, named for Gonzalo Giribet for his contributions to invertebrate zoology and to this study
Nomenclatural type
NCBI Assembly: GCA_017316185.1
Reference strain
DIV0080
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Type strain isolated from a harbor porpoise infection
Classification
Bacteria » Bacillota » Bacilli » Lactobacillales » Enterococcaceae » Vagococcus » Vagococcus giribetii
Parent
Vagococcus gtdb

Genomics

Accession
NCBI Assembly:GCA_017316185.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 1.9%
  • Quality: 89.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 11 amino acids
Sequencing depth
103.0 ×
Source
Other features
  • G+C Content: 34.59%
  • Coding Density: 89.61%
  • Codon Table: 11
  • N50: 95,474 bp
  • Contigs: 52
  • Largest Contig: 250,629 bp
  • Assembly Length: 2,728,262 bp
  • Ambiguous Assembly Fraction: 0.036%
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Manson, Abigail 7 months ago
Submitted by
Manson, Abigail 6 months ago
Curators
Endorsed by
Palmer, Marike 5 months ago
Validated by
Palmer, Marike 4 months ago
Date of priority
2024-03-01 12:37 AM (UTC)

Publications
1

Citation Title
Schwartzman et al., 2024, Proceedings of the National Academy of Sciences Global diversity of enterococci and description of 18 previously unknown species
Effective publication



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