Vagococcus giribetii

Citation

Formal styling

Vagococcus giribetii Schwartzman et al., 2024

Effective publication

Schwartzman et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:csh66vwa (validated)

Canonical URL

https://seqco.de/i:32958

Nomenclature

Rank

Species

Syllabication

gi.ri.bet'i.i

Etymology

N.L. gen. n. giribetii, of Giribet, named for Gonzalo Giribet for his contributions to invertebrate zoology and to this study

Nomenclatural type

NCBI Assembly: GCA_017316185.1

Reference strain

DIV0080

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Type strain isolated from a harbor porpoise infection

Classification

Bacteria » Bacillota » Bacilli » Lactobacillales » Enterococcaceae » Vagococcus » Vagococcus giribetii

Parent

Vagococcus gtdb

Genomics

Accession

NCBI Assembly:GCA_017316185.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 99.1%
• Contamination: 1.9%
• Quality: 89.6

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 11 amino acids

Sequencing depth

103.0 ×

Source

• BioSample: SAMN09399635

Other features

• G+C Content: 34.59%
• Coding Density: 89.61%
• Codon Table: 11
• N50: 95,474 bp
• Contigs: 52
• Largest Contig: 250,629 bp
• Assembly Length: 2,728,262 bp
• Ambiguous Assembly Fraction: 0.036%

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_017316185.1
• GTDB Tree: s__Vagococcus giribetii
• Wikispecies: Vagococcus giribetii (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 10 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Manson, Abigail about 1 year ago

Submitted by

Manson, Abigail about 1 year ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed by

Palmer, Marike 11 months ago

Validated by

Palmer, Marike 10 months ago

Date of priority

2024-03-01 12:37 AM (UTC)