JSON

Genome sc|0001466

Name

Mesorhizobium captivum

Database

NCBI Assembly

Accession

GCA_033977165.1

Genomics

Accession
NCBI Assembly:GCA_033977165.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 0.9%
  • Quality: 94.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
225.4 ×
Source
Other features
  • G+C Content: 63.5%
  • Coding Density: 86.48%
  • Codon Table: 11
  • N50: 124,007 bp
  • Contigs: 142
  • Largest Contig: 409,668 bp
  • Assembly Length: 6,954,195 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2013
Location
Lat Lon: 24.5165 S 28.7174 E
Toponym
Geo Loc Name: South Africa: Mookghopong, Limpopo
Environment
Isolation Source: root nodules
Env Broad Scale: Soil
Env Local Scale: Root nodule
Env Medium: Root nodule
Other
Host: Vachellia karroo
Package
Ncbi Submission Package: MIGS.ba.plant-associated.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.plant-associated
All retrieved samples
Metadata retrieved 9 months ago


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