Mesorhizobium captivum


Citation

Formal styling
Mesorhizobium captivum van Lill et al., 2024
Effective publication
van Lill et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:3oauw4q0 (validated)
Cannonical URL
https://seqco.de/i:32831

Nomenclature

Rank
Species
Syllabication
cap.ti'vum
Etymology
L. neut. adj. captivum, captured or captive, referring to the capturing of this organism with a compatible rhizobial host.
Nomenclatural type
NCBI Assembly: GCA_033977165.1
Reference strain
VK22E
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Cells are Gram-negative, motile rods. On YM agar, following 5 days of incubation at 28 °C, the colonies are circular, cream, translucent with entire margins and convex elevations with viscid consistency. The strain was able to grow in the pH range of 6 to 9 and tolerate a NaCl concentration of 0.3 % to 1.5 %. The strain can grow at 15 °C to 35 °C. The strain tested positive for urease and esculin hydrolysis. The strain could assimilate 4-nitrophenyl-β,D-galactopyranoside, D-glucose, L-arabinose, D-mannose, D-mannitol, D-maltose, potassium gluconate, adipic acid and trisodium citrate. The strain could utilize dextrin, D-maltose, D-trehalose, D-cellubiose, gentiobiose, sucrose, D-turanose, D-raffinose, α-D-lactose, D-melibiose, β -methyl-D glucoside, D-salicin, N-acetyl-D glucosamine, N-acetyl-β-D mannosamine, N-acetyl-D galactosamine, α-D-glucose, D-mannose, D-fructose, D-galactose, 3-methyl glucose, D-fucose, L- fucose, L-rhamnose, D-sorbitol, D-mannitol, D-arabitol, myo-inositol, glycerol, D-glucose6-PO4, D-fructose6-PO4, gelatin, glycyl-L-proline, L-alanine, L-arginine, L-aspartic acid, L-glutamic acid, L-histidine, pectin, D-galacturonic acid, L-galactonic acid lactone, D-gluconic acid, D-glucuronic acid, glucuronamide, mucic acid, D-lactic acid methyl ester, citric acid, L-lactic acid, D- malic acid, L-malic acid, bromo-succinic acid, Tween 40, γ -Amino-butyric acid, β-hydroxy-D-L-butyric acid, acetoacetic acid, propionic acid and acetic acid as sole sources of carbon. The strain was able to form effective symbiosis with V. karroo.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Phyllobacteriaceae » Mesorhizobium » Mesorhizobium captivum
Parent
Mesorhizobium

Genomics

Accession
NCBI Assembly:GCA_033977165.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 0.9%
  • Quality: 94.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
225.4 ×
Source
Other features
  • G+C Content: 63.5%
  • Coding Density: 86.48%
  • Codon Table: 11
  • N50: 124,007 bp
  • Contigs: 142
  • Largest Contig: 409,668 bp
  • Assembly Length: 6,954,195 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Van Lill, Melandre 8 months ago
Submitted by
Van Lill, Melandre 6 months ago
Curators
Endorsed by
Rodriguez-R, Luis M 3 months ago
Validated by
Rodriguez-R, Luis M about 2 months ago
Date of priority
2024-04-27 05:48 AM (UTC)

Publications
1

Citation Title
van Lill et al., 2024, Systematic and Applied Microbiology SeqCode facilitates naming of South African rhizobia left in limbo
Effective publication



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