Metadata as EBI XML
<EXPERIMENT_SET>
<EXPERIMENT accession="SRX9347512" alias="201904_HCA" center_name="SUB8357942" broker_name="NCBI">
<IDENTIFIERS>
<PRIMARY_ID>SRX9347512</PRIMARY_ID>
<SUBMITTER_ID namespace="SUB8357942">201904_HCA</SUBMITTER_ID>
</IDENTIFIERS>
<TITLE>ONT of Osur fastq HCA</TITLE>
<STUDY_REF accession="SRP288250">
<IDENTIFIERS>
<PRIMARY_ID>SRP288250</PRIMARY_ID>
<SUBMITTER_ID namespace="SUB8357942">bp0</SUBMITTER_ID>
</IDENTIFIERS>
</STUDY_REF>
<DESIGN>
<DESIGN_DESCRIPTION>Total DNA was isolated from 20 pooled adult abdomina (without wings) of O. surinamensis using the Epicentre MasterPure Complete DNA and RNA Purification Kit including RNase digestion. Long-read sequencing was performed on a MinION Mk1B Sequencing System. Upon receipt of flowcells, and again immediately prior to sequencing, the number of pores on flowcells was measured using the MinKNOW software. Flowcells were replaced into their packaging, sealed with parafilm and tape, and stored at 4C until use. Library preparation was performed with the Ligation Sequencing Kit (SQK-LSK109) and completed libraries were loaded on a flowcell (FLO-MIN106D) following the manufacturers instructions.</DESIGN_DESCRIPTION>
<SAMPLE_DESCRIPTOR accession="SRS7570510">
<IDENTIFIERS>
<PRIMARY_ID>SRS7570510</PRIMARY_ID>
<SUBMITTER_ID namespace="pda|sky.juli@gmail.com">Oryzaephilus surinamensis metagenome</SUBMITTER_ID>
</IDENTIFIERS>
</SAMPLE_DESCRIPTOR>
<LIBRARY_DESCRIPTOR>
<LIBRARY_NAME>201904_HCA</LIBRARY_NAME>
<LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
<LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
<LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
<LIBRARY_LAYOUT>
<SINGLE/>
</LIBRARY_LAYOUT>
</LIBRARY_DESCRIPTOR>
</DESIGN>
<PLATFORM>
<OXFORD_NANOPORE>
<INSTRUMENT_MODEL>MinION</INSTRUMENT_MODEL>
</OXFORD_NANOPORE>
</PLATFORM>
<EXPERIMENT_LINKS>
<EXPERIMENT_LINK>
<XREF_LINK>
<DB>ENA-SAMPLE</DB>
<ID>SRS7570510</ID>
</XREF_LINK>
</EXPERIMENT_LINK>
<EXPERIMENT_LINK>
<XREF_LINK>
<DB>ENA-SUBMISSION</DB>
<ID>SRA1146672</ID>
</XREF_LINK>
</EXPERIMENT_LINK>
<EXPERIMENT_LINK>
<XREF_LINK>
<DB>ENA-FASTQ-FILES</DB>
<ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX9347512&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
</XREF_LINK>
</EXPERIMENT_LINK>
<EXPERIMENT_LINK>
<XREF_LINK>
<DB>ENA-SUBMITTED-FILES</DB>
<ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX9347512&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
</XREF_LINK>
</EXPERIMENT_LINK>
</EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>
Metadata retrieved about 1 month ago