SeqCode Registry
cognitis nomina
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Genomes
sc|0000149
JSON
Genome sc|0000149
Name
Benthicola marisminoris
Ts
Database
NCBI Assembly
Accession
GCA_023554335.1
Genomics
Accession
NCBI Assembly:
GCA_023554335.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
93.96%
Contamination:
3.6%
Quality:
75.96
Ribosomal and transfer RNA genes
0 16S rRNAs
1 23S rRNA (up to 100.0%)
tRNAs for 17 amino acids
Source
BioSample: SAMN09092635
Other features
G+C Content:
66.45%
Coding Density:
93.41%
Codon Table:
11
N50:
10,285 bp
Contigs:
280
Largest Contig:
62,930 bp
Assembly Length:
2,573,992 bp
Ambiguous Assembly Fraction:
0.0%
Submitter comments
Genome quality has been evaluated with checkM, presence of 16S rRNA gene was checked with sortmerna and tRNA were identified using tRNAscan
Automated checks
Complete
Sample Metadata
Date
Not detected
Location
Lat Lon:
38.080353 N 122.108833 W
Toponym
Geo Loc Name:
USA: San Francisco Bay, California
Environment
Isolation Source:
Wetland
Gold Ecosystem Classification:
Environmental | Aquatic | Marine | Wetlands | Unclassified
Other
Not detected
Package
Ncbi Submission Package:
Metagenome.environmental.1.0
Biosamplemodel:
Metagenome or environmental
All retrieved samples
SAMN09092635
: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLB_D2
Metadata retrieved
8 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN09092635
×
INSDC secondary accession
SRS5650813
NCBI submission package
Metagenome.environmental.1.0
lat lon
38.080353 N 122.108833 W
organism
wetland metagenome
isolation source
Wetland
geo loc name
USA: San Francisco Bay, California
GOLD Ecosystem Classification
Environmental | Aquatic | Marine | Wetlands | Unclassified
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2019-11-18
ENA-LAST-UPDATE
2022-10-21
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