Genome sc|0000149


Database

NCBI Assembly

Accession

GCA_023554335.1

Genomics

Accession
NCBI Assembly:GCA_023554335.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 93.96%
  • Contamination: 3.6%
  • Quality: 75.96
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 17 amino acids
Source
Other features
  • G+C Content: 66.45%
  • Coding Density: 93.41%
  • Codon Table: 11
  • N50: 10,285 bp
  • Contigs: 280
  • Largest Contig: 62,930 bp
  • Assembly Length: 2,573,992 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome quality has been evaluated with checkM, presence of 16S rRNA gene was checked with sortmerna and tRNA were identified using tRNAscan
Automated checks
Complete

Last modified 4 days ago

Sample Metadata

BioSample entries
Date
Not detected
Location
Lat Lon: 38.080353 N 122.108833 W
Toponym
Geo Loc Name: USA: San Francisco Bay, California
Environment
Isolation Source: Wetland
Gold Ecosystem Classification: Environmental | Aquatic | Marine | Wetlands | Unclassified
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples

Metadata retrieved 4 days ago

Sequencing Experiments

Joice_CattailNLB_D2


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