Genome sc|0001513

Genomics

Accession

NCBI Assembly:GCA_015522635.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 95.79%
• Contamination: 1.74%
• Quality: 87.09

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 6.0%)
• tRNAs for 19 amino acids

Sequencing depth

41.93 ×

Source

• SRA: SRR10312493

Other features

• G+C Content: 41.6%
• Coding Density: 90.97%
• Codon Table: 11
• N50: 199,676 bp
• Contigs: 27
• Largest Contig: 389,289 bp
• Assembly Length: 1,454,292 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completion and contamination were estimated using CheckM2. RNAs were detected with the Prokaryotic Genome Annotation Pipeline (PGAP). Completion of the 23S rRNA gene fragment (190 bp) was estimated using 23S rRNA genes from Aeropyrum pernix and Aeropyrum camini.

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2018-03

Location

Lat Lon: 34.878866 S 179.071394 E

Toponym

Geo Loc Name: Pacific Ocean

Environment

Isolation Source: marine hydrothermal vent

Env Broad Scale: marine hydrothermal vent biome [ENVO:01000030]

Env Local Scale: marine hydrothermal vent [ENVO:01000122]

Env Medium: deep-sea hydrothermal deposit

Other

Depth: 1329.87

Package

Ncbi Submission Package: MIMS.me.water.6.0

Biosamplemodel: MIGS/MIMS/MIMARKS.water

All retrieved samples

• SRS5544496: J2-1041-6-R2-1-324

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Metadata retrieved 9 months ago