JSON

Genome sc|0001513

Name

Tiamatella incendiivivensTs

Database

NCBI Assembly

Accession

GCA_015522635.1

Genomics

Accession
NCBI Assembly:GCA_015522635.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.79%
  • Contamination: 1.74%
  • Quality: 87.09
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 6.0%)
  • tRNAs for 19 amino acids
Sequencing depth
41.93 ×
Source
Other features
  • G+C Content: 41.6%
  • Coding Density: 90.97%
  • Codon Table: 11
  • N50: 199,676 bp
  • Contigs: 27
  • Largest Contig: 389,289 bp
  • Assembly Length: 1,454,292 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completion and contamination were estimated using CheckM2. RNAs were detected with the Prokaryotic Genome Annotation Pipeline (PGAP). Completion of the 23S rRNA gene fragment (190 bp) was estimated using 23S rRNA genes from Aeropyrum pernix and Aeropyrum camini.
Automated checks
Complete
Last modified 11 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-03
Location
Lat Lon: 34.878866 S 179.071394 E
Toponym
Geo Loc Name: Pacific Ocean
Environment
Isolation Source: marine hydrothermal vent
Env Broad Scale: marine hydrothermal vent biome [ENVO:01000030]
Env Local Scale: marine hydrothermal vent [ENVO:01000122]
Env Medium: deep-sea hydrothermal deposit
Other
Depth: 1329.87
Package
Ncbi Submission Package: MIMS.me.water.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.water
All retrieved samples
Metadata retrieved 11 days ago

Sequencing Experiments

SRR10312493


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