Genome sc|0001520


Database

NCBI Assembly

Accession

GCA_036679665.1

Genomics

Accession
NCBI Assembly:GCA_036679665.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.69%
  • Contamination: 0.0%
  • Quality: 95.69
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
5.5 ×
Source
Other features
  • G+C Content: 50.32%
  • Coding Density: 92.69%
  • Codon Table: 11
  • N50: 44,178 bp
  • Contigs: 71
  • Largest Contig: 160,261 bp
  • Assembly Length: 1,689,527 bp
  • Ambiguous Assembly Fraction: 0.054%
Submitter comments
CheckM was employed to estimate metagenome-assembled-genome completeness and contamination using the taxon-specific workflow. IMG statistics report the number of rRNA and tRNA genes present in the assembly.
Automated checks
Complete

Last modified 9 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2009-09-15
Location
Lat Lon: 33.991019 S 151.232503 E
Toponym
Geo Loc Name: Australia: NSW, Sydney, Bare Island
Environment
Sample Type: metagenomic assembly
Isolation Source: bacterial pellet from marine sponge
Env Broad Scale: marine biome [ENVO:00000447]|marine benthic biome[ENVO:01000024]|marine subtidal rocky reef biome[ENVO:01000050]
Env Local Scale: coastal sea water[ENVO:00002150]
Env Medium: coastal sea water[ENVO:00002150]
Other
Host: Cymbastela concentrica
Package
Biosamplemodel: MIMAG.symbiont-associated • Metagenome or environmental
All retrieved samples

Metadata retrieved 9 days ago

Sequencing Experiments

Illumina shot-gun sequencing of bacterial pellet from marine sponge Cymbastela concentrica


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