Genome sc|0001520


Database

NCBI Assembly

Accession

GCA_036679665.1

Genomics

Accession
NCBI Assembly:GCA_036679665.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.69%
  • Contamination: 0.0%
  • Quality: 95.69
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
5.5 ×
Source
Other features
  • G+C Content: 50.32%
  • Coding Density: 92.69%
  • Codon Table: 11
  • N50: 44,178 bp
  • Contigs: 71
  • Largest Contig: 160,261 bp
  • Assembly Length: 1,689,527 bp
  • Ambiguous Assembly Fraction: 0.054%
Submitter comments
CheckM was employed to estimate metagenome-assembled-genome completeness and contamination using the taxon-specific workflow. IMG statistics report the number of rRNA and tRNA genes present in the assembly.
Automated checks
Complete

Last modified 19 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2009-09-15
Location
Lat Lon: 33.991019 S 151.232503 E
Toponym
Geo Loc Name: Australia: NSW, Sydney, Bare Island
Environment
Sample Type: metagenomic assembly
Isolation Source: bacterial pellet from marine sponge
Env Broad Scale: marine biome [ENVO:00000447]|marine benthic biome[ENVO:01000024]|marine subtidal rocky reef biome[ENVO:01000050]
Env Local Scale: coastal sea water[ENVO:00002150]
Env Medium: coastal sea water[ENVO:00002150]
Other
Host: Cymbastela concentrica
Package
Biosamplemodel: MIMAG.symbiont-associated • Metagenome or environmental
All retrieved samples

Metadata retrieved 19 days ago

Sequencing Experiments

Illumina shot-gun sequencing of bacterial pellet from marine sponge Cymbastela concentrica


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