Genome sc|0001523

Genomics

Accession

NCBI Assembly:GCA_016710785.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.02%
• Contamination: 1.1%
• Quality: 90.52

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

17.0 ×

Source

• BioSample: SAMN16426120
• BioSample: SAMN14825699

Other features

• G+C Content: 69.08%
• Coding Density: 88.12%
• Codon Table: 11
• N50: 673,794 bp
• Contigs: 13
• Largest Contig: 785,493 bp
• Assembly Length: 4,924,095 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination values were evaluates using CheckM v1.0.11. dRep v2.3.2 at 95% ANI clustering was used to indicate the number of distinct species. Prokka v1.14 and Infernal v1.1.2 were used to identify the 16S, 23S, 5S rRNA, and tRNA genes.

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2018-08-29

Location

Lat Lon: 57.577275 N 9.992971 E

Toponym

Geo Loc Name: Denmark: Hirtshals

Environment

Sample Type: metagenomic assembly

Isolation Source: activated sludge from Hirt_18-Q3-R61-65 • activated sludge

Env Broad Scale: aquatic biome [ENVO:00002030]

Env Local Scale: Waste Water [ENVO:00002001]

Env Medium: Activated Sludge [ENVO:00002046]

Other

Depth: 1m

Package

Ncbi Submission Package: MIMAG.wastewater.6.0 • MIMS.me.wastewater.5.0

Biosamplemodel: MIMAG.wastewater • MIGS/MIMS/MIMARKS.wastewater

All retrieved samples

• SAMN16426120: MIMAG Metagenome-assembled Genome sample from Chloroflexota bacterium
• SAMN14825699: MIMS Environmental/Metagenome sample from activated sludge metagenome

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Metadata retrieved 7 months ago