Epilinea brevis^Ts

Citation

Formal styling

Epilinea brevis^Ts Petriglieri et al., 2023 (valid 2024)

Effective publication

Petriglieri et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:82uy5hy3 (validated)

Canonical URL

https://seqco.de/i:43954

Nomenclature

Rank

Species

Syllabication

bre'vis

Etymology

L. fem. adj. brevis, short

Nomenclatural type

NCBI Assembly: GCA_016710785.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The species is established on the same basis as the genus and the type material is the genome Hirt_BATAC.427. Fluorescence in situ hybridization with genus-specific FISH probes shows filamentous morphology (4-57 × 0.4-0.7 µm).

Classification

Bacteria » Chloroflexota » Anaerolineae » Epilineales » Epilineaceae » Epilinea » Epilinea brevis^Ts

Parent

Epilinea gtdb assigned in Petriglieri et al., 2023

Genomics

Accession

NCBI Assembly:GCA_016710785.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.02%
• Contamination: 1.1%
• Quality: 90.52

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

17.0 ×

Source

• BioSample: SAMN16426120
• BioSample: SRS6587279

Other features

• G+C Content: 69.08%
• Coding Density: 88.12%
• Codon Table: 11
• N50: 673,794 bp
• Contigs: 13
• Largest Contig: 785,493 bp
• Assembly Length: 4,924,095 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination values were evaluates using CheckM v1.0.11. dRep v2.3.2 at 95% ANI clustering was used to indicate the number of distinct species. Prokka v1.14 and Infernal v1.1.2 were used to identify the 16S, 23S, 5S rRNA, and tRNA genes.

Automated checks

Complete

See additional details

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Last modified 21 days ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_016710785.1
• GTDB Tree: s__Epilinea brevis
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Epilinea brevis (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 6 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Petriglieri, Francesca 10 months ago

Submitted by

Petriglieri, Francesca 7 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Rodriguez-R, Luis M 6 months ago

Date of priority

2024-04-26 11:27 AM (UTC)