Genome sc|0001564

Name

Flexifilum affine

Database

NCBI Assembly

Accession

GCA_016713325.1

Genomics

Accession

NCBI Assembly:GCA_016713325.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

Completeness: 92.19%
Contamination: 1.82%
Quality: 83.09

Ribosomal and transfer RNA genes

2 16S rRNAs (up to 100.0%)
2 23S rRNAs (up to 100.0%)
tRNAs for 19 amino acids

Sequencing depth

13.0 ×

Source

Other features

G+C Content: 62.18%
Coding Density: 85.86%
Codon Table: 11
N50: 206,963 bp
Contigs: 107
Largest Contig: 1,226,158 bp
Assembly Length: 9,033,822 bp
Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

Last modified 2 months ago

Sample Metadata

BioSample entries

Date

Collection Date: 2018-08-29

Location

Lat Lon: 55° 33′ 8.5″ N, 9° 43′ 13″ E

View map of sampling locations

Toponym

Geo Loc Name: Denmark: Fredericia

Environment

Sample Type: metagenomic assembly

Isolation Source: activated sludge from Fred_18-Q3-R57-64 • activated sludge from wastewater treatment plant

Env Broad Scale: aquatic biome [ENVO:00002030]

Env Local Scale: Waste Water [ENVO:00002001]

Env Medium: Activated Sludge [ENVO:00002046]

Other

Depth: 1m

Package

Ncbi Submission Package: MIMAG.wastewater.6.0 • MIMS.me.wastewater.6.0

Biosamplemodel: MIMAG.wastewater • MIGS/MIMS/MIMARKS.wastewater

All retrieved samples

Metadata retrieved 2 months ago

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