Keywords: GSC:MIxS;MIMAG:6.0

collection_date

2018-08

organism

Armatimonadota bacterium

env_broad_scale

Hot spring

metagenomic

1

derived-from

This BioSample is a metagenomic assembly obtained from the hot springs metagenome BioSample: SAMN35165530

environmental-sample

1

env_local_scale

Hot spring sediment

metagenome-source

hot springs metagenome

isolate

JZ-2_201808_bins_221

NCBI submission package

MIMAG.sediment.6.0

depth

Surface

elev

Unknown

geo_loc_name

China: Tengchong county, Yunnan, JZ-2

env_medium

Hot spring sediment

lat_lon

25.44 N 98.46 E

isolation_source

Hot spring sediment

sample-type

metagenomic assembly

BioSampleModel

MIMAG.sediment

ENA-FIRST-PUBLIC

2023-05-22

ENA-LAST-UPDATE

2023-09-06

collection_date

2018-08

NCBI submission package

Metagenome.environmental.1.0

organism

hot springs metagenome

geo_loc_name

China: Tengchong, Yunnan

lat_lon

25.44 N 98.46 E

isolation_source

JZ-2

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2023-05-18

ENA-LAST-UPDATE

2023-05-23

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX23395861" alias="2024011719" center_name="SUB14155362" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX23395861</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB14155362">2024011719</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>JZ-2_201808_metagenomics</TITLE>
  <STUDY_REF accession="SRP485978">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP485978</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA973840</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>metagenomic sequencing of sediment sample from hot spring</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS20256794">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS20256794</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN35165530</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>2024011719</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>HiSeq X Ten</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS20256794</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1788749</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX23395861&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX23395861&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>