JSON

Genome sc|0001620

Name

“Thermosaccharophagus tengchongensis”

Database

INSDC Nucleotide

Accession

JAVHTD000000000

Genomics

Accession
INSDC Nucleotide:JAVHTD000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.44%
  • Contamination: 0.64%
  • Quality: 94.24
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
18.0 ×
Source
Other features
  • G+C Content: 52.0%
  • Coding Density: 91.12%
  • Codon Table: 11
  • N50: 102,274 bp
  • Contigs: 44
  • Largest Contig: 251,150 bp
  • Assembly Length: 2,742,608 bp
  • Ambiguous Assembly Fraction: 0.0015%
Submitter comments
Genome quality estimates were done with both CheckM and CheckM2, with values reported here for CheckM2. The number of tRNAs were calculated with tRNAscan-SE v. 2.0.11 and rRNAs were identified with barrnap v. 0.9.
Automated checks
Complete

Sample Metadata

BioSample entries
Date
Collection Date: 2019-01
Location
Lat Lon: 24.95390 N 98.43819 E
Toponym
Geo Loc Name: China: Tengchong, Diretiyanqu
Environment
Isolation Source: hot springs sediment
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples
Metadata retrieved 6 months ago


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