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Thermosaccharophagus gerlachensisTs

Citation

Formal styling
Thermosaccharophagus gerlachensisTs Nou et al., 2024
Effective publication
Nou et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:x3m88du8 (validated)
Canonical URL
https://seqco.de/i:44087

Nomenclature

Rank
Species
Syllabication
ger.lach.en'sis
Etymology
N.L. masc. adj. gerlachensis, of Gerlach, the region where Great Boiling Spring is located in Nevada, where this organism is from
Nomenclatural type
NCBI Assembly: GCA_041538025.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The sole genome representative for the species was recovered from a metagenome from Great Boiling Spring, Gerlach, Nevada, USA. GC content is 47%. No terminal oxidases are encoded by this genome, and the presence of the Wood-Ljungdahl pathway likely indicates this species is a strict anaerobe. Genes encoding a group 4d hydrogenase is present in multiple copies.
Classification
Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Thermosaccharophagaceae » Thermosaccharophagus » Thermosaccharophagus gerlachensisTs
Parent
Thermosaccharophagus

Genomics

Accession
NCBI Assembly:GCA_041538025.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.01%
  • Contamination: 0.38%
  • Quality: 96.11
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
66.5 ×
Source
Other features
  • G+C Content: 47.0%
  • Coding Density: 92.85%
  • Codon Table: 11
  • N50: 47,069 bp
  • Contigs: 85
  • Largest Contig: 152,822 bp
  • Assembly Length: 2,453,947 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome quality estimates were done with both CheckM and CheckM2, with values reported here for CheckM2. The number of tRNAs were calculated with tRNAscan-SE v. 2.0.11 and rRNAs were identified with barrnap v. 0.9.
Automated checks
Complete
See additional details
Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike 9 months ago
Submitted by
Palmer, Marike 9 months ago
Curators
Endorsed by
Rodriguez-R, Luis M 5 months ago
Validated by
St. John, Emily 30 days ago
Date of priority
2024-11-20 02:57 PM (UTC)

Publications
1

Citation Title
Nou et al., 2024, Nature Communications Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota
Effective publication


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