Genome sc|0001621

Genomics

Accession

NCBI Assembly:GCA_025057575.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 90.89%
• Contamination: 2.33%
• Quality: 79.24

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

9.7 ×

Source

• SRA: SRX12118864
• SRA: SRX12118863

Other features

• G+C Content: 55.0%
• Coding Density: 93.45%
• Codon Table: 11
• N50: 48,151 bp
• Contigs: 102
• Largest Contig: 132,961 bp
• Assembly Length: 2,779,926 bp
• Ambiguous Assembly Fraction: 0.004%

Submitter comments

Genome quality estimates were done with both CheckM and CheckM2, with values reported here for CheckM2. The number of tRNAs were calculated with tRNAscan-SE v. 2.0.11 and rRNAs were identified with barrnap v. 0.9.

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2020-08 • 2019-11

Location

Lat Lon: 3.9956 N 101.3933 E

Toponym

Geo Loc Name: Malaysia: Sungkai, Perak

Environment

Isolation Source: Brown Biofilm 3 • Brown Biofilm 1

Env Broad Scale: hot spring [ENVO:00000051]

Env Local Scale: alkaline hot spring [ENVO:00002119]

Env Medium: Biofilm [ENVO:01000156]

Other

Depth: 50 cm • 30 cm

Package

Ncbi Submission Package: MIMS.me.microbial.6.0

Biosamplemodel: MIMS.me

All retrieved samples

• SRS10073546: MIMS Environmental/Metagenome sample from hot springs metagenome
• SRS10073544: MIMS Environmental/Metagenome sample from hot springs metagenome

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Metadata retrieved 4 months ago