Genome sc|0001621


Database

NCBI Assembly

Accession

GCA_025057575.1

Genomics

Accession
NCBI Assembly:GCA_025057575.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.89%
  • Contamination: 2.33%
  • Quality: 79.24
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
9.7 ×
Source
Other features
  • G+C Content: 55.0%
  • Coding Density: 93.45%
  • Codon Table: 11
  • N50: 48,151 bp
  • Contigs: 102
  • Largest Contig: 132,961 bp
  • Assembly Length: 2,779,926 bp
  • Ambiguous Assembly Fraction: 0.004%
Submitter comments
Genome quality estimates were done with both CheckM and CheckM2, with values reported here for CheckM2. The number of tRNAs were calculated with tRNAscan-SE v. 2.0.11 and rRNAs were identified with barrnap v. 0.9.
Automated checks
Complete

Last modified 3 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2020-08 • 2019-11
Location
Lat Lon: 3.9956 N 101.3933 E
Toponym
Geo Loc Name: Malaysia: Sungkai, Perak
Environment
Isolation Source: Brown Biofilm 3 • Brown Biofilm 1
Env Broad Scale: hot spring [ENVO:00000051]
Env Local Scale: alkaline hot spring [ENVO:00002119]
Env Medium: Biofilm [ENVO:01000156]
Other
Depth: 50 cm • 30 cm
Package
Ncbi Submission Package: MIMS.me.microbial.6.0
Biosamplemodel: MIMS.me
All retrieved samples

Metadata retrieved 3 days ago

Sequencing Experiments

Metagenome shotgun sequencing of Brown Biofilm sample 3
Metagenome shotgun sequencing of Brown Biofilm sample 1a


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