JSON

Genome sc|0001623

Name

“Fervidibacter japonicus”

Database

NCBI Assembly

Accession

GCA_002898575.1

Genomics

Accession
NCBI Assembly:GCA_002898575.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.09%
  • Contamination: 2.6%
  • Quality: 83.09
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 58.5%
  • Coding Density: 91.04%
  • Codon Table: 11
  • N50: 69,561 bp
  • Contigs: 75
  • Largest Contig: 172,999 bp
  • Assembly Length: 3,153,697 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome quality estimates were done with both CheckM and CheckM2, with values reported here for CheckM2. The number of tRNAs were calculated with tRNAscan-SE v. 2.0.11 and rRNAs were identified with barrnap v. 0.9.
Automated checks
Complete

Sample Metadata

BioSample entries
Date
Collection Date: 2017-06-13
Location
Lat Lon: 35.3202 N 139.6500 E
Toponym
Geo Loc Name: Japan: Kanagawa, Yokosuka
Environment
Env Broad Scale: microbial mat
Env Local Scale: continuous-flow bioreactor
Env Medium: microbial mat material
Other
Depth: 0
Package
Ncbi Submission Package: MIMS.me.microbial.5.0
Biosamplemodel: MIMS.me.microbial
All retrieved samples
Metadata retrieved 6 months ago


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