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Fervidibacter canadensis

Citation

Formal styling
Fervidibacter canadensis Nou et al., 2024
Effective publication
Nou et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:x3m88du8 (validated)
Canonical URL
https://seqco.de/i:44081

Nomenclature

Rank
Species
Syllabication
ca.na.den'sis
Etymology
N.L. masc. adj. canadensis, of Canada, the country where this organism is from
Nomenclatural type
NCBI Assembly: GCA_041446545.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Genomes of this species were recovered from metagenomes from the geothermal Dewar Creek, British Columbia, Canada. GC content of genomes were approximately 57%. Subunits for both the high-affinity and low-affinity terminal oxidases are encoded in the genomes. The high-affinity respiratory H2-uptake [NiFe] group 1h hydrogenases are encoded by genomes of the species, likely fueling respiration during carbon starvation.
Classification
Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Fervidibacteraceae » Fervidibacter » Fervidibacter canadensis
Parent
Fervidibacter gtdb

Genomics

Accession
NCBI Assembly:GCA_041446545.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.86%
  • Contamination: 2.07%
  • Quality: 85.51
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
77.1 ×
Source
Other features
  • G+C Content: 57.0%
  • Coding Density: 92.52%
  • Codon Table: 11
  • N50: 133,816 bp
  • Contigs: 48
  • Largest Contig: 443,425 bp
  • Assembly Length: 3,177,583 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome quality estimates were done with both CheckM and CheckM2, with values reported here for CheckM2. The number of tRNAs were calculated with tRNAscan-SE v. 2.0.11 and rRNAs were identified with barrnap v. 0.9.
Automated checks
Complete
See additional details
Last modified about 1 year ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 1 year ago by Palmer, Marike
Submitted
Over 1 year ago by Palmer, Marike
Curators
Endorsed
Over 1 year ago by Rodriguez-R, Luis M
Validated
About 1 year ago by St. John, Emily
Date of priority
2024-11-20 02:57 PM (UTC)

Publications
1

Citation Title
Nou et al., 2024, Nature Communications Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota
Effective publication


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seqco.de/r:x3m88du8