SeqCode Registry
cognitis nomina
About
Search
•
Login
Register
Genomes
sc|0001690
JSON
Genome sc|0001690
Name
Lucifugimonas marina
Ts
Database
INSDC Nucleotide
Accession
CP046146.1
Genomics
Accession
INSDC Nucleotide:
CP046146.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
99.01%
Contamination:
0.0%
Quality:
99.01
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 21 amino acids
Sequencing depth
188.65 ×
Source
BioSample: SAMN13314701
Other features
G+C Content:
51.8%
Coding Density:
87.4%
Codon Table:
11
N50:
3,091,874 bp
Contigs:
1
Largest Contig:
3,091,874 bp
Assembly Length:
3,091,874 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2017-10-17
Location
Lat Lon:
37.0335 N 126.274917 E
Toponym
Geo Loc Name:
South Korea: Yellow sea near Garorim bay
Environment
Sample Type:
cell culture
Isolation Source:
Yellow sea
Other
Depth:
1m
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
All retrieved samples
SAMN13314701
: SAR202 cluster bacterium JH545
Metadata retrieved
4 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN13314701
×
marine Chloroflexi bacterium isolated from the Yellow Sea
strain
JH545
collection_date
2017-10-17
type-material
reference material of Candidatus Lucifugimonas marina
organism
Candidatus Lucifugimonas marina
collected_by
Ji-Hui Seo
sample_type
cell culture
NCBI submission package
Microbe.1.0
depth
1m
Tax ID
3038979
geo_loc_name
South Korea: Yellow sea near Garorim bay
lat_lon
37.0335 N 126.274917 E
biomaterial_provider
Jang-Cheon Cho
isolation_source
Yellow sea
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2023-04-06
ENA-LAST-UPDATE
2024-06-21
Search
×
Names
Publications
Authors
Subjects