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cognitis nomina
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Genomes
sc|0000018
JSON
Genome sc|0000018
Name
Macondimonas diazotrophica
Ts
Database
NCBI Assembly
Accession
GCF_004684205.1
Genomics
Accession
NCBI Assembly:
GCF_004684205.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
96.8%
Contamination:
1.15%
Quality:
91.05
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
90.0 ×
Source
BioSample: SAMN11302943
Other features
G+C Content:
61.57%
Coding Density:
90.75%
Codon Table:
11
N50:
178,425 bp
Contigs:
94
Largest Contig:
315,069 bp
Assembly Length:
2,800,882 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2010-10-20
Location
Lat Lon:
30.32 N 87.17 W
Toponym
Geo Loc Name:
USA: Pensacola Municipal Beach, FL
Environment
Env Material:
Oil contaminated soil (beach sands affected by the Deepwater Horizon oil spill)
Env Biome:
Sandy beach
Isolation Source:
beach sand contaminated with Macondo oil
Env Broad Scale:
ENVO:00002875
Env Local Scale:
ENVO:00000316
|
ENVO:00002875
Env Medium:
ENVO:00002875
| ENVO:0000213
Other
Depth:
20-30 cm
Package
Ncbi Submission Package:
MIGS.ba.sediment.5.0
Biosamplemodel:
MIGS/MIMS/MIMARKS.sediment
All retrieved samples
SAMN11302943
: MIGS Cultured Bacterial/Archaeal sample from Candidatus Macondimonas diazotrophica
Metadata retrieved
6 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN11302943
×
Keywords: GSC:MIxS;MIGS:5.0
strain
KTK01
isol_growth_condt
https://doi.org/10.1038/s41396-019-0400-5
ref_biomaterial
https://doi.org/10.1038/s41396-019-0400-5
organism
Candidatus Macondimonas diazotrophica
collection date
2010-10-20
isolation source
beach sand contaminated with Macondo oil
env_broad_scale
ENVO:00002875
geo loc name
USA: Pensacola Municipal Beach, FL
env_local_scale
ENVO:00000316 | ENVO:00002875
NCBI submission package
MIGS.ba.sediment.5.0
depth
20-30 cm
lat lon
30.32 N 87.17 W
env_material
Oil contaminated soil (beach sands affected by the Deepwater Horizon oil spill)
elev
0 m
num_replicons
1
env biome
Sandy beach
env_medium
ENVO:00002875 | ENVO:0000213
env feature
Sandy beach
BioSampleModel
MIGS/MIMS/MIMARKS.sediment
ENA-FIRST-PUBLIC
2019-04-01
ENA-LAST-UPDATE
2021-02-28
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