Macondimonas diazotrophica^Ts

Citation

Formal styling

Macondimonas diazotrophica^Ts Karthikeyan et al., 2019 (valid 2022)

Effective publication

Karthikeyan et al., 2019

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:6ns_rdob (validated)

Canonical URL

https://seqco.de/i:277

Nomenclature

Rank

Species

Syllabication

di.a.zo.tro'phi.ca

Etymology

Gr. pref. di-, in two; N.L. neut. n. azotum, from Fr. n. azote (from Gr. prep. a, not; Gr. n. zôê, life; N.Gr. n. azôê, not sustaining life), nitrogen; N.L. pref. diazo-, pertaining to dinitrogen; Gr. adj. trophikos -ê -on, feeding, tending; N.L. fem. adj. diazotrophica, one that feeds on dinitrogen, named after its ability to fix atmospheric nitrogen

Nomenclatural type

NCBI Assembly: GCF_004684205.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Cells grown on solidified mineral artificial seawater media using hexadecane as substrate show a coccobacillus morphology, of about 0.6 μm in length and 0.35 μm in width, and formed circular colonies. Members of the species are aerobes, growing at a pH range of 6.5–8.5 with a pH optimum of 7.5, and a salinity range of 250–500 mM of NaCl, with an optimum concentration of 330 mM. The temperature range for optimal growth is 22–30 °C, with no growth observed at 4 °C and above 34 °C. Cells can grow with hexadecane and pyruvate as a sole carbon sources and fix nitrogen. Genome size is ~2.8 Mbp with a G+C% content of 61.56. The designated type material is strain KTK01, and its genome sequence can be found under NCBI BioSample accession number SAMN11302943.

Classification

Bacteria » Pseudomonadota » Gammaproteobacteria » Chromatiales » Ectothiorhodospiraceae » Macondimonas » Macondimonas diazotrophica^Ts

Parent

Macondimonas gtdb

Genomics

Accession

NCBI Assembly:GCF_004684205.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 96.8%
• Contamination: 1.15%
• Quality: 91.05

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

90.0 ×

Source

• BioSample: SAMN11302943
• And 8 more…

Other features

• G+C Content: 61.57%
• Coding Density: 90.75%
• Codon Table: 11
• N50: 178,425 bp
• Contigs: 94
• Largest Contig: 315,069 bp
• Assembly Length: 2,800,882 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• NCBI Taxonomy: 2305248
• GTDB Genome: GCF_004684205.1
• GTDB Tree: s__Macondimonas diazotrophica
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Macondimonas diazotrophica (see reference source)

Search sequences

• Seach in NCBI Nucleotide
• NCBI Genomes table

Local history

• This name was last modified about 2 years ago
• Submission process status
• Quality checks before valid publication

Registered by

Rodriguez-R, Luis M over 2 years ago

Submitted by

Rodriguez-R, Luis M over 2 years ago

Curators

• Chuvochina, Maria (nomenclature)
• Palmer, Marike

Endorsed by

Palmer, Marike about 2 years ago

Validated by

Palmer, Marike about 2 years ago

Date of priority

2022-04-19 11:06 PM (UTC)