Macondimonas diazotrophicaTs


Citation

Formal styling
Macondimonas diazotrophicaTs Karthikeyan et al., 2019 (valid 2022)
Effective publication
Karthikeyan et al., 2019
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:6ns_rdob (validated)
Cannonical URL
https://seqco.de/i:277

Nomenclature

Rank
Species
Syllabication
di.a.zo.tro'phi.ca
Etymology
Gr. pref. di-, in two; N.L. neut. n. azotum, from Fr. n. azote (from Gr. prep. a, not; Gr. n. zôê, life; N.Gr. n. azôê, not sustaining life), nitrogen; N.L. pref. diazo-, pertaining to dinitrogen; Gr. adj. trophikos -ê -on, feeding, tending; N.L. fem. adj. diazotrophica, one that feeds on dinitrogen, named after its ability to fix atmospheric nitrogen
Nomenclatural type
NCBI Assembly: GCF_004684205.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Cells grown on solidified mineral artificial seawater media using hexadecane as substrate show a coccobacillus morphology, of about 0.6 μm in length and 0.35 μm in width, and formed circular colonies. Members of the species are aerobes, growing at a pH range of 6.5–8.5 with a pH optimum of 7.5, and a salinity range of 250–500 mM of NaCl, with an optimum concentration of 330 mM. The temperature range for optimal growth is 22–30 °C, with no growth observed at 4 °C and above 34 °C. Cells can grow with hexadecane and pyruvate as a sole carbon sources and fix nitrogen. Genome size is ~2.8 Mbp with a G+C% content of 61.56. The designated type material is strain KTK01, and its genome sequence can be found under NCBI BioSample accession number SAMN11302943.
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Chromatiales » Ectothiorhodospiraceae » Macondimonas » Macondimonas diazotrophicaTs
Parent
Macondimonas gtdb

Genomics

Accession
NCBI Assembly:GCF_004684205.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 96.8%
  • Contamination: 1.15%
  • Quality: 91.05
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
90.0 ×
Source
Other features
  • G+C Content: 61.57%
  • Coding Density: 90.75%
  • Codon Table: 11
  • N50: 178,425 bp
  • Contigs: 94
  • Largest Contig: 315,069 bp
  • Assembly Length: 2,800,882 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Rodriguez-R, Luis M about 2 years ago
Submitted by
Rodriguez-R, Luis M about 2 years ago
Curators
Endorsed by
Palmer, Marike almost 2 years ago
Validated by
Palmer, Marike almost 2 years ago
Date of priority
2022-04-19 11:06 PM (UTC)

Publications
2

Citation Title
Oren, Garrity, 2021, International Journal of Systematic and Evolutionary Microbiology Candidatus List No. 2. Lists of names of prokaryotic Candidatus taxa
Karthikeyan et al., 2019, The ISME Journal “Candidatus Macondimonas diazotrophica”, a novel gammaproteobacterial genus dominating crude-oil-contaminated coastal sediments
Effective publication



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