Genome sc|0001891

Genomics

Accession

INSDC Nucleotide:JAPYNE000000000

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 91.5%
• Contamination: 1.9%
• Quality: 82.0

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 79.0%)
• 1 23S rRNA (up to 61.0%)
• tRNAs for 20 amino acids

Sequencing depth

20.0 ×

Source

• BioSample: SAMN30287272
• BioSample: SAMN13227199
• BioSample: SAMN13227202

Other features

• G+C Content: 63.76%
• Coding Density: 89.58%
• Codon Table: 11
• N50: 49,677 bp
• Contigs: 66
• Largest Contig: 207,179 bp
• Assembly Length: 2,210,887 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination estimates are based on MIGA.

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2014-06

Location

Lat Lon: 18.816 S 147.633 E

Toponym

Geo Loc Name: Australia: Davies Reef, Great Barrier Reef

Environment

Sample Type: metagenomic assembly

Isolation Source: sponge tissue, high temperature, low CO2 • sponge tissue

Env Broad Scale: coral reef [ENVO:00000150]

Env Local Scale: coral reef [ENVO:00000150]

Env Medium: sponge

Other

Host: Phyllospongia foliascens

Package

Ncbi Submission Package: MIMAG.host-associated.6.0 • Metagenome.environmental.1.0

Biosamplemodel: MIMAG.host-associated • Metagenome or environmental

All retrieved samples

• SAMN30287272: MIMAG Metagenome-assembled Genome sample from Gammaproteobacteria bacterium
• SAMN13227199: Metagenome or environmental sample from sponge metagenome
• SAMN13227202: Metagenome or environmental sample from sponge metagenome

---

Metadata retrieved 3 months ago