Genome sc|0001891


Database

INSDC Nucleotide

Accession

JAPYNE000000000

Genomics

Accession
INSDC Nucleotide:JAPYNE000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.5%
  • Contamination: 1.9%
  • Quality: 82.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 79.0%)
  • 1 23S rRNA (up to 61.0%)
  • tRNAs for 20 amino acids
Sequencing depth
20.0 ×
Source
Other features
  • G+C Content: 63.76%
  • Coding Density: 89.58%
  • Codon Table: 11
  • N50: 49,677 bp
  • Contigs: 66
  • Largest Contig: 207,179 bp
  • Assembly Length: 2,210,887 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination estimates are based on MIGA.
Automated checks
Complete

Last modified 5 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2014-06
Location
Lat Lon: 18.816 S 147.633 E
Toponym
Geo Loc Name: Australia: Davies Reef, Great Barrier Reef
Environment
Sample Type: metagenomic assembly
Isolation Source: sponge tissue, high temperature, low CO2 • sponge tissue
Env Broad Scale: coral reef [ENVO:00000150]
Env Local Scale: coral reef [ENVO:00000150]
Env Medium: sponge
Other
Host: Phyllospongia foliascens
Package
Biosamplemodel: MIMAG.host-associated • Metagenome or environmental
Additional Accessions
SAMN13227199, SAMN13227202
All retrieved samples

Metadata retrieved 5 days ago

Sequencing Experiments

Metagenomes of microbes from Carteriospongia foliascens
Metagenomes of microbes from Carteriospongia foliascens


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