Foliamicus numerosus^Ts

Citation

Formal styling

Foliamicus numerosus^Ts Nguyen et al., 2023 (valid 2024)

Effective publication

Nguyen et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:icd0lna9 (validated)

Canonical URL

https://seqco.de/i:44973

Nomenclature

Rank

Species

Syllabication

numerosus

Etymology

L. masc. adj. numerosus, numerous

Nomenclatural type

INSDC Nucleotide: JAPYNE000000000

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

A gammaproteobacterial symbiont of sponges

Classification

Bacteria » Pseudomonadota » Gammaproteobacteria » Foliamicales » Foliamicaceae » Foliamicus » Foliamicus numerosus^Ts

Parent

Foliamicus gtdb assigned in Nguyen et al., 2023

Genomics

Accession

INSDC Nucleotide:JAPYNE000000000

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 91.5%
• Contamination: 1.9%
• Quality: 82.0

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 79.0%)
• 1 23S rRNA (up to 61.0%)
• tRNAs for 20 amino acids

Sequencing depth

20.0 ×

Source

• BioSample: SAMN30287272
• BioSample: SRS5616643
• BioSample: SRS5616646

Other features

• G+C Content: 63.76%
• Coding Density: 89.58%
• Codon Table: 11
• N50: 49,677 bp
• Contigs: 66
• Largest Contig: 207,179 bp
• Assembly Length: 2,210,887 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination estimates are based on MIGA.

Automated checks

Complete

See additional details

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Last modified 5 days ago

Metadata

Outside links and data sources

• GTDB Tree: s__Foliamicus numerosus
• Wikispecies: Foliamicus numerosus (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 4 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Thomas, Torsten 6 months ago

Submitted by

Thomas, Torsten 5 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed by

Palmer, Marike 5 months ago

Validated by

Rodriguez-R, Luis M 4 months ago

Date of priority

2024-06-18 12:11 AM (UTC)