SeqCode Registry
cognitis nomina
About
Search
•
Login
Register
Genomes
sc|0001904
JSON
Genome sc|0001904
Name
Salsuginivita brisbanensis
Ts
Database
NCBI Assembly
Accession
GCA_038144975.1
Genomics
Accession
NCBI Assembly:
GCA_038144975.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
98.63%
Contamination:
0.0%
Quality:
98.63
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Source
BioSample: SAMN37862208
BioSample: SAMN37699813
Other features
G+C Content:
64.5%
Coding Density:
89.87%
Codon Table:
11
N50:
152,102 bp
Contigs:
30
Largest Contig:
410,793 bp
Assembly Length:
2,456,412 bp
Ambiguous Assembly Fraction:
0.0077%
Submitter comments
Completeness and contamination were evaluated using CheckM v 1.1.3
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2020-02-26
Location
Lat Lon:
27.505250 S 152.969917 E
Toponym
Geo Loc Name:
Australia:Brisbane
Environment
Sample Type:
metagenomic assembly
Isolation Source:
estuary
Env Broad Scale:
estuarine biome
Env Local Scale:
estuary • brackish
Env Medium:
estuarine water
Other
Depth:
0
Package
Ncbi Submission Package:
MIMAG.water.6.0
•
MIMS.me.water.6.0
Biosamplemodel:
MIMAG.water
• MIGS/MIMS/MIMARKS.water
All retrieved samples
SAMN37862208
: MIMAG Metagenome-assembled Genome sample from Opitutales bacterium
SAMN37699813
: BR2_February_replicate_03
Metadata retrieved
3 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN37862208
×
Keywords: GSC:MIxS;MIMAG:6.0
collection_date
2020-02-26
organism
Opitutales bacterium
env_broad_scale
estuarine biome
metagenomic
1
environmental-sample
1
env_local_scale
estuary
metagenome-source
estuary metagenome
isolate
SD3114_S44.maxbin.056
NCBI submission package
MIMAG.water.6.0
depth
0
geo_loc_name
Australia:Brisbane
isolate-name-alias
BRE_MAG_2123
env_medium
estuarine water
lat_lon
27.505250 S 152.969917 E
isolation_source
estuary
sample-type
metagenomic assembly
sample derived-from
SAMN37699813
BioSampleModel
MIMAG.water
ENA-FIRST-PUBLIC
2024-04-03
ENA-LAST-UPDATE
2024-04-03
SAMN37699813
×
Keywords: GSC:MIxS;MIMS:6.0
collection_date
2020-02-26
INSDC secondary accession
SRS19117215
NCBI submission package
MIMS.me.water.6.0
depth
0
organism
estuary metagenome
env_broad_scale
estuarine biome
geo_loc_name
Australia:Brisbane
tidal_stage
high
env_medium
estuarine water
lat_lon
27.505250 S 152.969917 E
samp_collect_device
0.22um filters
env_local_scale
brackish
BioSampleModel
MIGS/MIMS/MIMARKS.water
ENA-FIRST-PUBLIC
2024-04-03
ENA-LAST-UPDATE
2024-04-03
Search
×
Names
Publications
Authors
Subjects