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Nitrosopumilus brisbanensis

Citation

Formal styling
Nitrosopumilus brisbanensis Prabhu et al., 2024
Effective publication
Prabhu et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:sfdglxu8 (validated)
Canonical URL
https://seqco.de/i:46747

Nomenclature

Rank
Species
Syllabication
bris.ban.en'sis
Etymology
N.L. masc. adj. brisbanensis, of or belonging to Brisbane
Nomenclatural type
NCBI Assembly: GCA_038152885.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Based on the genome reporting standards for MAGs, the estimated completeness was 98.63%, contamination 0%, and the presence of the %S (111 bp), 16S (1,464 bp), and 23S (3,117 bp) rRNA gene and 43 tRNAs. Type genome is defined as “high-quality” draft MAG,with genome size of 1.3Mbps
Classification
Archaea » Thermoproteota » Nitrososphaeria » Nitrosopumilales » Nitrosopumilaceae » Nitrosopumilus » Nitrosopumilus brisbanensis
Parent
Nitrosopumilus

Genomics

Accession
NCBI Assembly:GCA_038152885.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.72%
  • Contamination: 1.57%
  • Quality: 84.87
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 18 amino acids
Source
Other features
  • G+C Content: 35.0%
  • Coding Density: 92.48%
  • Codon Table: 11
  • N50: 27,692 bp
  • Contigs: 93
  • Largest Contig: 96,131 bp
  • Assembly Length: 1,297,295 bp
  • Ambiguous Assembly Fraction: 0.12%
Submitter comments
Completeness and contamination were evaluated using CheckM v 1.1.3
Automated checks
Complete
See additional details
Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Chuvochina, Maria 7 months ago
Submitted by
Chuvochina, Maria 4 months ago
Curators
Validated by
Rodriguez-R, Luis M 4 months ago
Date of priority
2024-08-12 01:22 AM (UTC)

Publications
1

Citation Title
Prabhu et al., 2024, ISME Communications Machine learning and metagenomics identifies uncharacterized taxa inferred to drive biogeochemical cycles in a subtropical hypereutrophic estuary
Effective publication


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