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cognitis nomina
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Genomes
sc|0001912
JSON
Genome sc|0001912
Name
Nitrosopumilus brisbanensis
Database
NCBI Assembly
Accession
GCA_038152885.1
Genomics
Accession
NCBI Assembly:
GCA_038152885.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
92.72%
Contamination:
1.57%
Quality:
84.87
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
2 23S rRNAs (up to 100.0%)
tRNAs for 18 amino acids
Source
BioSample: SAMN37860860
BioSample: SAMN37699840
Other features
G+C Content:
35.0%
Coding Density:
92.48%
Codon Table:
11
N50:
27,692 bp
Contigs:
93
Largest Contig:
96,131 bp
Assembly Length:
1,297,295 bp
Ambiguous Assembly Fraction:
0.12%
Submitter comments
Completeness and contamination were evaluated using CheckM v 1.1.3
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2020-08-31
Location
Lat Lon:
27.505250 S 152.969917 E
Toponym
Geo Loc Name:
Australia:Brisbane
Environment
Sample Type:
metagenomic assembly
Isolation Source:
estuary
Env Broad Scale:
estuarine biome
Env Local Scale:
estuary
Env Medium:
estuarine water
Other
Depth:
0
Package
Ncbi Submission Package:
MIMAG.water.6.0
Biosamplemodel:
MIMAG.water
All retrieved samples
SAMN37860860
: MIMAG Metagenome-assembled Genome sample from Nitrosopumilus sp.
Metadata retrieved
5 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN37860860
×
Keywords: GSC:MIxS;MIMAG:6.0
collection_date
2020-08-31
organism
Nitrosopumilus sp.
env_broad_scale
estuarine biome
metagenomic
1
environmental-sample
1
env_local_scale
estuary
metagenome-source
estuary metagenome
isolate
139563_S164_maxbin_bins.tsv.144
NCBI submission package
MIMAG.water.6.0
depth
0
geo_loc_name
Australia:Brisbane
isolate-name-alias
BRE_MAG_858
env_medium
estuarine water
lat_lon
27.505250 S 152.969917 E
isolation_source
estuary
sample-type
metagenomic assembly
sample derived-from
SAMN37699840
BioSampleModel
MIMAG.water
ENA-FIRST-PUBLIC
2024-04-03
ENA-LAST-UPDATE
2024-04-03
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