Genome sc|0000020


Database

NCBI Assembly

Accession

GCA_009919195.1

Genomics

Accession
NCBI Assembly:GCA_009919195.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 78.3%
  • Contamination: 1.9%
  • Quality: 68.8
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 2 23S rRNAs (up to 0.0%)
  • tRNAs for 19 amino acids
Sequencing depth
4.57 ×
Source
Other features
  • G+C Content: 34.4%
  • Coding Density: 94.07%
  • Codon Table: 11
  • N50: 3,989 bp
  • Contigs: 1,298
  • Largest Contig: 56,370 bp
  • Assembly Length: 3,794,481 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2010-09-24 • 2012-08-05 • 2013-09-08 • 2014-09-24 • 2015-10-04 • 2010-09-17 • 2012-08-01 • 2013-09-06 • 2014-09-27 • 2015-10-05 • 2012-08-02
Location
Lat Lon: 31.66294 N 85.062168 W • 32.664624 N 85.087393 W • 34.261117 N 83.950069 W • 30.743083 N 84.858652 W • 32.933463 N 85.19634 W
Toponym
Geo Loc Name: USA: Chattahoochee River • USA: Lake Eufaula • USA: Lake Harding • USA: Lake Lanier • USA: Lake Seminole • USA: Lake Westpoint
Environment
Sample Type: metagenomic assembly
Env Biome: lake
Isolation Source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014 • Lake Eufaula, USA • Lake Harding, USA • Lake Lanier, USA • Lake Seminole, USA • Lake Westpoint, USA • freshwater lake
Other
Ph: 6.77 • 6.5 • 6.89 • 6 • 8.02 • 6.64 • 8.61 • 6.13 • 5.38 • 7.99 • 9.26 • 7.74 • 6.2 • 6.53 • 7.25
Temp: 31.68 • 31.75 C • 31.5 C • 30.04 C • 28.23 C • 23.42 C • 29.31 C • 31.38 C • 31.68 C • 25.84 C • 24.17 C • 31.18 C • 30.03 C • 31.16 C • 30.37 C • 27.27 C • 23.63 C • 30.7 C • 32.26 C • 26.36 C • 24.28 C
Rel To Oxygen: aerobe
Package
Ncbi Submission Package: Microbe.1.0Metagenome.environmental.1.0
Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

Metagenome of Lake Eufaula from September 24, 2010
Metagenome of Lake Eufaula from August 5, 2012
Metagenome of Lake Eufaula from September 8, 2013
Metagenome of Lake Eufaula from October 4, 2015
Metagenome of Lake Eufaula from October 4, 2015
Metagenome of Lake Harding from September 17, 2010
Metagenome of Lake Harding from September 6, 2013
Metagenome of Lake Harding from September 27, 2014
Metagenome of Lake Harding from October 5, 2015
Metagenome of Lake Lanier from August 2, 2012
Metagenome of Lake Seminole from September 24, 2010
Metagenome of Lake Seminole from August 5, 2012
Metagenome of Lake Seminole from September 8, 2013
Metagenome of Lake Seminole from September 24, 2014
Metagenome of Lake Seminole from October 4, 2015
Metagenome of Lake Westpoint from September 17, 2010
Metagenome of Lake Westpoint from August 1, 2012
Metagenome of Lake Westpoint from September 6, 2013
Metagenome of Lake Westpoint from September 27, 2014
Metagenome of Lake Westpoint from October 5, 2015
Metagenome of Lake Eufaula from September 24, 2014
Metagenome of Lake Eufaula from October 4, 2015
Metagenome of Lake Harding from August 1, 2012


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