Elulimicrobium humileTs


Citation

Formal styling
Elulimicrobium humileTs Rodriguez-R et al., 2020 (valid 2022)
Effective publication
Rodriguez-R et al., 2020
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:abw4_f8a (validated)
Cannonical URL
https://seqco.de/i:516

Nomenclature

Rank
Species
Syllabication
hu.mi'le
Etymology
L. neut. adj. humile, humble, low
Nomenclatural type
NCBI Assembly: GCA_009919195.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species displays a consistently low abundance when detected between the months of July and October, and a geographic range restricted to the tree northernmost lakes on the Chattahoochee River (USA): lakes Lanier, West Point, and Eufaula. According to the genome assembly, WB6_2A_207 is 3.79 Mbp long with 1,298 contigs (N50: 4 kbp) and 34.3% G+C content. It includes 4,108 predicted proteins as well as 90 non-coding RNA loci (87 tRNA, 1 rRNA, and 2 tmRNA). The estimated coding density is 94.1%. Based on genome annotation, this organism is predicted to have sucrose and oxidase activity and the capability of gelatin and arginine dihydrolase activity. The type material is the genome WB6_2A_207, deposited in the NCBI database with Genome Accession RGCK00000000 and BioSample SAMN10223143. 
Classification
Bacteria » Elulimicrobiota » Elulimicrobiia » Elulimicrobiales » Elulimicrobiaceae » Elulimicrobium » Elulimicrobium humileTs
Parent
Elulimicrobium

Genomics

Accession
NCBI Assembly:GCA_009919195.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 78.3%
  • Contamination: 1.9%
  • Quality: 68.8
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 2 23S rRNAs (up to 0.0%)
  • tRNAs for 19 amino acids
Sequencing depth
4.57 ×
Source
See all sources
Other features
  • G+C Content: 34.4%
  • Coding Density: 94.07%
  • Codon Table: 11
  • N50: 3,989 bp
  • Contigs: 1,298
  • Largest Contig: 56,370 bp
  • Assembly Length: 3,794,481 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Rodriguez-R, Luis M over 2 years ago
Submitted by
Rodriguez-R, Luis M over 2 years ago
Curators
Endorsed by
Palmer, Marike over 1 year ago
Validated by
Palmer, Marike over 1 year ago
Date of priority
2022-01-27 09:17 AM (UTC)

Publications
1

Citation Title
Rodriguez-R et al., 2020, Environmental Microbiology Iterative subtractive binning of freshwater chronoseries metagenomes identifies over 400 novel species and their ecologic preferences
Effective publication



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