Genome sc|0002007


Database

NCBI Assembly

Accession

GCA_028817255.1

Genomics

Accession
NCBI Assembly:GCA_028817255.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.2%
  • Contamination: 0.04%
  • Quality: 95.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 59.0%)
  • 0 23S rRNAs
  • tRNAs for 19 amino acids
Sequencing depth
27.1 ×
Source
Other features
  • G+C Content: 65.21%
  • Coding Density: 89.85%
  • Codon Table: 11
  • N50: 11,376 bp
  • Contigs: 204
  • Largest Contig: 61,009 bp
  • Assembly Length: 1,790,111 bp
  • Ambiguous Assembly Fraction: 0.12%
Submitter comments
CheckM2 was used to estimate completeness and contaminations
Automated checks
Complete

Last modified 5 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2015-12-22
Location
Lat Lon: 18.832467 S 147.633250 E
Toponym
Geo Loc Name: Australia: Davies Reef
Environment
Sample Type: metagenomic assembly
Isolation Source: marine sponge reef biome
Env Broad Scale: coral reef
Env Local Scale: marine sponge reef biome
Env Medium: Tissue
Other
Host: Stylissa flabelliformis
Package
Ncbi Submission Package: Microbe.1.0MIMS.me.host-associated.6.0
Biosamplemodel: Microbe, viral or environmental • MIGS/MIMS/MIMARKS.host-associated
Additional Accessions
SAMN13943218
All retrieved samples

Metadata retrieved 5 days ago

Sequencing Experiments

Stylissa 3


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