collection_date

2015-12-22

isolate

STY3_bin_2

NCBI submission package

Microbe.1.0

organism

Gammaproteobacteria bacterium

host

Stylissa flabelliformis

metagenomic

1

geo_loc_name

Australia: Davies Reef

lat_lon

18.832467 S 147.633250 E

environmental-sample

1

metagenome-source

sponge metagenome

sample-type

metagenomic assembly

sample derived-from

SAMN13943218

BioSampleModel

Microbe, viral or environmental

ENA-FIRST-PUBLIC

2021-02-10

ENA-LAST-UPDATE

2022-11-18

Keywords: GSC:MIxS;MIMS:6.0

collection_date

2015-12-22

INSDC secondary accession

SRS6086972

NCBI submission package

MIMS.me.host-associated.6.0

organism

sponge metagenome

env_broad_scale

coral reef

host

Stylissa flabelliformis

geo_loc_name

Australia: Davies Reef

env_medium

Tissue

lat_lon

18.832467 S 147.633250 E

env_local_scale

marine sponge reef biome

isolation_source

marine sponge reef biome

BioSampleModel

MIGS/MIMS/MIMARKS.host-associated

ENA-FIRST-PUBLIC

2021-02-10

ENA-LAST-UPDATE

2022-11-18

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX7658002" alias="Stylissa 3" center_name="SUB6872813" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX7658002</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6872813">Stylissa 3</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Stylissa 3</TITLE>
  <STUDY_REF accession="SRP246369">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP246369</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA602572</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Nextera xt</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS6086972">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS6086972</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|stevenrobbins">STY3</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Stylissa 3</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS6086972</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1035362</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7658002&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7658002&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>