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Porifericomes azotivoransTs

Citation

Formal styling
Porifericomes azotivoransTs Nguyen et al., 2023 (priority 2024)
Effective publication
Nguyen et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:icd0lna9 (validated)
Canonical URL
https://seqco.de/i:44959

Nomenclature

Rank
Species
Syllabication
azotivorans
Etymology
N.L. neut. n. azotum, nitrogen; L. pres. part. vorans, devouring; N.L. masc. part. adj. azotivorans, devour nitrogen
Nomenclatural type
NCBI Assembly: GCA_028817255.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
A gammaproteobacterial symbiont of a sponges. The type genome was originally recovered in Robbins et al. (2021).
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Porifericomitales » Porifericomitaceae » Porifericomes » Porifericomes azotivoransTs
Parent
Porifericomes gtdb assigned in Nguyen et al., 2023

Genomics

Accession
NCBI Assembly:GCA_028817255.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.2%
  • Contamination: 0.04%
  • Quality: 95.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 59.0%)
  • 0 23S rRNAs
  • tRNAs for 19 amino acids
Sequencing depth
27.1 ×
Source
Other features
  • G+C Content: 65.21%
  • Coding Density: 89.85%
  • Codon Table: 11
  • N50: 11,376 bp
  • Contigs: 204
  • Largest Contig: 61,009 bp
  • Assembly Length: 1,790,111 bp
  • Ambiguous Assembly Fraction: 0.12%
Submitter comments
CheckM2 was used to estimate completeness and contaminations
Automated checks
Complete
See additional details
Last modified about 1 year ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 1 year ago by Thomas, Torsten
Submitted
Over 1 year ago by Thomas, Torsten
Curators
Endorsed
Over 1 year ago by Palmer, Marike
Validated
Over 1 year ago by Rodriguez-R, Luis M
Date of priority
2024-06-18 12:11 AM (UTC)

Publications
2

Citation Title
Nguyen et al., 2023, Systematic and Applied Microbiology Functional characterization and taxonomic classification of novel gammaproteobacterial diversity in sponges
Effective publication
Assigned this taxon
Robbins et al., 2021, The ISME Journal A genomic view of the microbiome of coral reef demosponges


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  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license
seqco.de/r:icd0lna9