SeqCode Registry
cognitis nomina
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Genomes
sc|0002319
JSON
Genome sc|0002319
Name
“Patescibacterium danicum”
Database
NCBI Assembly
Accession
GCA_016699775.1
Genomics
Accession
NCBI Assembly:
GCA_016699775.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
100.0%
Contamination:
0.69%
Quality:
96.55
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 19 amino acids
Sequencing depth
18.5 ×
Source
BioSample: SAMN16426283
Other features
G+C Content:
35.5%
Coding Density:
88.01%
Codon Table:
11
N50:
938,851 bp
Contigs:
1
Largest Contig:
938,851 bp
Assembly Length:
938,851 bp
Ambiguous Assembly Fraction:
0.0%
Submitter comments
ABY1 (GCA_016699775.1) represents a complete, single contig genome with a size of 939 kbp.
Automated checks
Complete
Sample Metadata
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Not detected
All retrieved samples
No BioSample metadata was found associated to this genome.
Metadata retrieved
2 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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