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Patescibacterium danicumTs

Citation

Formal styling
Patescibacterium danicumTs Dutkiewicz et al., 2025 (priority 2024)
Effective publication
Dutkiewicz et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:gs62mgo0 (validated)
Canonical URL
https://seqco.de/i:48241

Nomenclature

Rank
Species
Syllabication
da'ni.cum
Etymology
N.L. neut. adj. danicum, Danish, named after Denmark, the country from which the type genome originates.
Nomenclatural type
NCBI Assembly: GCA_016699775.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The species is represented by the metagenome-assembled genome (MAG) sequence ABY1, available in GTDB as GCA_016699775.1, obtained from metagenomic sequences from Mariagerfjord WWTP; Denmark. ABY1 represents a complete, single-contig genome of 938,851 bp, with a GC content of 35.4%, a coding density of 88.17% and a protein count of 890. ABY1 encodes one 5S, 16S, and 23S ribosomal RNA gene and 41 tRNAs. 
Classification
Bacteria » Patescibacteriota » Patescibacteriia » Patescibacteriales » Patescibacteriaceae » Patescibacterium » Patescibacterium danicumTs
Parent
Patescibacterium gtdb assigned in Dutkiewicz et al., 2025

Genomics

Accession
NCBI Assembly:GCA_016699775.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.69%
  • Quality: 96.55
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
18.5 ×
Source
Other features
  • G+C Content: 35.5%
  • Coding Density: 88.01%
  • Codon Table: 11
  • N50: 938,851 bp
  • Contigs: 1
  • Largest Contig: 938,851 bp
  • Assembly Length: 938,851 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
 ABY1 (GCA_016699775.1) represents a complete, single contig genome with a size of 939 kbp. 
Please note that CheckM2 underestimates the completeness of this MAG and predicts only  96.03%.
Automated checks
Complete
See additional details
Last modified 10 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 1 year ago by Rinke, Chris
Submitted
About 1 year ago by Rinke, Chris
Curators
Validated
10 months ago by Rodriguez-R, Luis M
Date of priority
2024-12-01 08:11 PM (UTC)

Publications
1

Citation Title
Dutkiewicz et al., 2025, ISME Communications Proposal of Patescibacterium danicum gen. nov., sp. nov. in the ubiquitous bacterial phylum Patescibacteriota phyl. nov
Effective publication
Assigned this taxon


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  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license
seqco.de/r:gs62mgo0