Patescibacterium danicum^Ts

Citation

Formal styling

Patescibacterium danicum^Ts Dutkiewicz et al., 2024

Effective publication

Dutkiewicz et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:gs62mgo0 (validated)

Canonical URL

https://seqco.de/i:48241

Nomenclature

Rank

Species

Syllabication

da'ni.cum

Etymology

N.L. neut. adj. danicum, Danish, named after Denmark, the country from which the type genome originates.

Nomenclatural type

NCBI Assembly: GCA_016699775.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The species is represented by the metagenome-assembled genome (MAG) sequence ABY1, available in GTDB as GCA_016699775.1, obtained from metagenomic sequences from Mariagerfjord WWTP; Denmark. ABY1 represents a complete, single-contig genome of 938,851 bp, with a GC content of 35.4%, a coding density of 88.17% and a protein count of 890. ABY1 encodes one 5S, 16S, and 23S ribosomal RNA gene and 41 tRNAs. 

Classification

Bacteria » Patescibacteriota » Patescibacteriia » Patescibacteriales » Patescibacteriaceae » Patescibacterium » Patescibacterium danicum^Ts

Parent

Patescibacterium assigned in Dutkiewicz et al., 2024

Genomics

Accession

NCBI Assembly:GCA_016699775.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 0.69%
• Quality: 96.55

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 18 amino acids

Sequencing depth

18.5 ×

Source

• BioSample: SAMN16426283
• BioSample: SAMN14825711

Other features

• G+C Content: 35.5%
• Coding Density: 88.01%
• Codon Table: 11
• N50: 938,851 bp
• Contigs: 1
• Largest Contig: 938,851 bp
• Assembly Length: 938,851 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

 ABY1 (GCA_016699775.1) represents a complete, single contig genome with a size of 939 kbp. 
Please note that CheckM2 underestimates the completeness of this MAG and predicts only  96.03%.

Automated checks

Complete

See additional details

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Last modified about 2 months ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_016699775.1
• Wikispecies: Patescibacterium danicum

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified about 1 month ago
• Submission process status
• Quality checks before valid publication

Registered by

Rinke, Chris, created 9 months ago

Submitted by

Rinke, Chris 4 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Rodriguez-R, Luis M about 1 month ago

Date of priority

2024-12-01 08:11 PM (UTC)