SeqCode Registry
cognitis nomina
About
Search
•
Login
Register
Genomes
sc|0002323
JSON
Genome sc|0002323
Name
“Zemynaea palustris”
Database
NCBI Assembly
Accession
GCA_003134695.1
Genomics
Accession
NCBI Assembly:
GCA_003134695.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
97.69%
Contamination:
0.1%
Quality:
97.19
Ribosomal and transfer RNA genes
1 16S rRNA (up to 55.0%)
0 23S rRNAs
tRNAs for 20 amino acids
Source
BioSample: SAMN08179326
Other features
G+C Content:
64.33%
Coding Density:
92.87%
Codon Table:
11
N50:
88,284 bp
Contigs:
61
Largest Contig:
279,952 bp
Assembly Length:
2,695,887 bp
Ambiguous Assembly Fraction:
0.079%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2011-10-16
Location
Lat Lon:
68.3535 N 19.0471 E
Toponym
Geo Loc Name:
Sweden: Stordalen Mire
Environment
Sample Type:
metagenomic assembly
Isolation Source:
permafrost active layer soil
Other
Host:
not applicable
Depth:
0.26-0.29
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
All retrieved samples
SAMN08179326
: MAG WPS2_palsa_1498 from metagenome 20111000_P3M
Metadata retrieved
2 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN08179326
×
strain
not applicable
altitude
363 m
collection_date
2011-10-16
organism
Candidatus Eremiobacterota bacterium
metagenomic
1
sample_type
metagenomic assembly
environmental-sample
1
metagenome-source
peat metagenome
isolate
palsa_1498
NCBI submission package
Microbe.1.0
depth
0.26-0.29
host
not applicable
name
note
geo_loc_name
Sweden: Stordalen Mire
lat_lon
68.3535 N 19.0471 E
value
This BioSample is a metagenomic assembly obtained from the 20111000_P3M metagenome BioSample: SAMN07124964.
isolation_source
permafrost active layer soil
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2018-05-19
ENA-LAST-UPDATE
2024-03-18
Search
×
Names
Publications
Authors
Subjects