Zemelea palustris^Ts

Citation

Formal styling

Zemelea palustris^Ts corrig. Ji et al., 2021 (valid 2024)

Effective publication

Ji et al., 2021

Corrigendum

In SeqCode Registry from “Zemynaea palustris” (sic)

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:tgimo_87 (validated)

Canonical URL

https://seqco.de/i:41948

Nomenclature

Rank

Species

Syllabication

pa.lus'tris

Etymology

L. fem. adj. palustris, marshy, swampy

Nomenclatural type

NCBI Assembly: GCA_003134695.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Obligate heterotroph. Anaerobic respiration: nitrate. Organic substrates include peptides, amino acids, carboxylates, sarcosine, formate, poly- and oligosaccharides, sugars. PHA storage. Also defined based on ANI, and phylogenies of 16S rRNA gene, 15 ribosomal proteins, and the GTDB.

Notes

Originally described by Ji et al. (2021) as Candidatus Zemynaea palustris. However, Bowman (2023) proposed the genus Zemynaea as a new genus for Massilia arenosa - which is considered validly published under the ICNP and a correct name. Therefore, the candidatus genus has been renamed Zemelea; i.e., derived from "Zemele", another of the names given to the goddess Zemyna.

Classification

Bacteria » Eremiobacterota » Eremiobacteria » “Baltobacterales” » “Baltobacteraceae” » Zemelea » Zemelea palustris^Ts

Parent

Zemelea assigned in Ji et al., 2021

Pseudonyms

• Zemynaea palustris (Original, corrected name)

Genomics

Accession

NCBI Assembly:GCA_003134695.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.66%
• Contamination: 0.03%
• Quality: 96.51

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 55.0%)
• 0 23S rRNAs
• tRNAs for 20 amino acids

Sequencing depth

116.0 ×

Source

• BioSample: SAMN08179326
• BioSample: SAMN07124964

Other features

• G+C Content: 64.5%
• Coding Density: 92.87%
• Codon Table: 11
• N50: 88,284 bp
• Contigs: 61
• Largest Contig: 279,952 bp
• Assembly Length: 2,695,887 bp
• Ambiguous Assembly Fraction: 0.079%

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_003134695.1
• GTDB Tree: s__Zemynaea palustris
• Wikispecies: Zemelea palustris (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 8 days ago
• Submission process status
• Quality checks before valid publication

Registered by

Ferrari, Belinda 3 months ago

Submitted by

Ferrari, Belinda 2 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Palmer, Marike 8 days ago

Date of priority

2024-10-17 12:47 AM (UTC)