Genome sc|0002363

Genomics

Accession

NCBI Assembly:GCA_041446545.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 95.86%
• Contamination: 2.07%
• Quality: 85.51

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 21 amino acids

Sequencing depth

77.1 ×

Source

• BioSample: SAMN06343854
• BioSample: SAMN38845029

Other features

• G+C Content: 57.0%
• Coding Density: 92.52%
• Codon Table: 11
• N50: 133,816 bp
• Contigs: 48
• Largest Contig: 443,425 bp
• Assembly Length: 3,177,583 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Genome quality estimates were done with both CheckM and CheckM2, with values reported here for CheckM2. The number of tRNAs were calculated with tRNAscan-SE v. 2.0.11 and rRNAs were identified with barrnap v. 0.9.

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2012-09-26

Location

Lat Lon: 49.9543 N 116.5155 W

Toponym

Geo Loc Name: Canada: British Columbia

Environment

Sample Type: metagenomic assembly

Isolation Source: hot spring sediment • Hot spring sediment

Env Broad Scale: aquatic biome [ENVO:00002030]

Env Local Scale: hot spring [ENVO:00000051]

Env Medium: sediment [ENVO:00002007]

Gold Ecosystem Classification: Environmental | Aquatic | Thermal springs | Hot (42-90C) | Sediment

Other

Host: not applicable

Package

Ncbi Submission Package: Metagenome.environmental.1.0 • MIMAG.6.0

Biosamplemodel: Metagenome or environmental • MIMAG

Additional Accessions

SRR5580900

All retrieved samples

• SAMN06343854: Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC2 2012 metaG
• SAMN38845029: Fervidibacter canadensis 3300025775_14

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Metadata retrieved 2 months ago