Genome sc|0002364

Genomics

Accession

NCBI Assembly:GCA_041538025.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 98.01%
• Contamination: 0.38%
• Quality: 96.11

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 21 amino acids

Sequencing depth

66.5 ×

Source

• BioSample: SAMN08778269
• BioSample: SAMN38845047

Other features

• G+C Content: 47.0%
• Coding Density: 92.85%
• Codon Table: 11
• N50: 47,069 bp
• Contigs: 85
• Largest Contig: 152,822 bp
• Assembly Length: 2,453,947 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Genome quality estimates were done with both CheckM and CheckM2, with values reported here for CheckM2. The number of tRNAs were calculated with tRNAscan-SE v. 2.0.11 and rRNAs were identified with barrnap v. 0.9.

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2013-03-24

Location

Lat Lon: 40.6614 N 119.3661 W

Toponym

Geo Loc Name: USA: Great Boiling Springs, Gerlach, Nevada • USA: Nevada

Environment

Sample Type: metagenomic assembly

Isolation Source: top 1 cm of 70 C hot spring sediment • Hot spring sediment

Env Broad Scale: aquatic biome [ENVO:00002030]

Env Local Scale: hot spring [ENVO:00000051]

Env Medium: sediment [ENVO:00002007]

Gold Ecosystem Classification: Environmental | Aquatic | Thermal springs | Hot (42-90C) | Sediment

Other

Not detected

Package

Ncbi Submission Package: Metagenome.environmental.1.0 • MIMAG.6.0

Biosamplemodel: Metagenome or environmental • MIMAG

Additional Accessions

SRR7067823

All retrieved samples

• SAMN08778269: Sediment microbial communities from Great Boiling Springs, Gerlach, Nevada, United States - GBS 70_MetaG
• SAMN38845047: Thermosaccharophagus gerlachensis 3300020139_22

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Metadata retrieved 13 days ago