Genome sc|0002364


Database

NCBI Assembly

Accession

GCA_041538025.1

Genomics

Accession
NCBI Assembly:GCA_041538025.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.01%
  • Contamination: 0.38%
  • Quality: 96.11
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
66.5 ×
Source
Other features
  • G+C Content: 47.0%
  • Coding Density: 92.85%
  • Codon Table: 11
  • N50: 47,069 bp
  • Contigs: 85
  • Largest Contig: 152,822 bp
  • Assembly Length: 2,453,947 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome quality estimates were done with both CheckM and CheckM2, with values reported here for CheckM2. The number of tRNAs were calculated with tRNAscan-SE v. 2.0.11 and rRNAs were identified with barrnap v. 0.9.
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2013-03-24
Location
Lat Lon: 40.6614 N 119.3661 W
Toponym
Geo Loc Name: USA: Great Boiling Springs, Gerlach, Nevada • USA: Nevada
Environment
Sample Type: metagenomic assembly
Isolation Source: top 1 cm of 70 C hot spring sediment • Hot spring sediment
Env Broad Scale: aquatic biome [ENVO:00002030]
Env Local Scale: hot spring [ENVO:00000051]
Env Medium: sediment [ENVO:00002007]
Gold Ecosystem Classification: Environmental | Aquatic | Thermal springs | Hot (42-90C) | Sediment
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0MIMAG.6.0
Biosamplemodel: Metagenome or environmental • MIMAG
Additional Accessions
SRR7067823
All retrieved samples

Metadata retrieved 2 months ago


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