Genome sc|0000026

Genomics

Accession

NCBI Assembly:GCA_001442925.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 95.61%
• Contamination: 1.91%
• Quality: 86.06

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

68.0 ×

Source

• BioSample: SAMN03436306

Other features

• G+C Content: 37.37%
• Coding Density: 94.22%
• Codon Table: 11
• N50: 342,558 bp
• Contigs: 18
• Largest Contig: 393,956 bp
• Assembly Length: 2,592,687 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified about 1 month ago

Sample Metadata

BioSample entries

• BioSample: SAMN03436306

Date

Collection Date: 2011-11-09

Location

Lat Lon: 49.954267 N 116.515467 W

Toponym

Geo Loc Name: Canada:Dewar Creek

Environment

Env Material: Hot springs sediment

Sample Type: metagenomic assembly

Env Biome: Mountain Springs

Isolation Source: hot springs sediment

Other

Depth: 0 m

Package

Ncbi Submission Package: MIMS.me.water.6.0

Biosamplemodel: MIGS/MIMS/MIMARKS.water

All retrieved samples

• SAMN03436306: MIMS Environmental/Metagenome sample from Candidatus Kryptonium thompsonii

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Metadata retrieved about 1 month ago