JSON

Genome sc|0000263

Name

Palauibacter australiensis

Database

NCBI Assembly

Accession

GCA_026705295.1

Genomics

Accession
NCBI Assembly:GCA_026705295.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 93.41%
  • Contamination: 3.3%
  • Quality: 76.91
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 2 23S rRNAs (up to 61.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 69.27%
  • Coding Density: 93.42%
  • Codon Table: 11
  • N50: 30,938 bp
  • Contigs: 188
  • Largest Contig: 82,540 bp
  • Assembly Length: 3,583,099 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
 Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA 
Automated checks
Complete
Last modified 3 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2015-12-22
Location
Lat Lon: 18.832467 S 147.633250 E
Toponym
Geo Loc Name: Australia: Davies Reef
Environment
Isolation Source: marine sponge reef biome
Env Broad Scale: coral reef
Env Local Scale: marine sponge reef biome
Env Medium: Tissue
Other
Host: Ircinia ramosa
Package
Ncbi Submission Package: MIMS.me.host-associated.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.host-associated
All retrieved samples
Metadata retrieved 3 months ago

Sequencing Experiments

SRR10996930


© 2022-2025 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license