Genome sc|0000265


Database

NCBI Assembly

Accession

GCA_947581745.1

Genomics

Accession
NCBI Assembly:GCA_947581745.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.21%
  • Contamination: 2.2%
  • Quality: 80.21
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 0 23S rRNAs
  • tRNAs for 17 amino acids
Source
Other features
  • G+C Content: 67.11%
  • Coding Density: 93.13%
  • Codon Table: 11
  • N50: 11,649 bp
  • Contigs: 315
  • Largest Contig: 39,862 bp
  • Assembly Length: 2,894,191 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
 Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA 
Automated checks
Complete

Last modified 8 days ago

Sample Metadata

BioSample entries
Date
Not detected
Location
Lat Lon: 38.080353 N 122.108833 W
Toponym
Geo Loc Name: USA: San Francisco Bay, California
Environment
Isolation Source: Wetland
Gold Ecosystem Classification: Environmental | Aquatic | Marine | Wetlands | Unclassified
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples

Metadata retrieved 8 days ago

Sequencing Experiments

Joice_CattailNLB_D2


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license