Genome sc|0000266

Name

Humimonas hydrogenitrophica^Ts

Database

NCBI Assembly

Accession

GCA_947581615.1

Genomics

Accession

NCBI Assembly:GCA_947581615.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

Completeness: 96.7%
Contamination: 3.3%
Quality: 80.2

Ribosomal and transfer RNA genes

1 16S rRNA (up to 100.0%)
0 23S rRNAs
tRNAs for 20 amino acids

Source

SRA: SRR5210316

Other features

G+C Content: 71.38%
Coding Density: 91.82%
Codon Table: 11
N50: 52,189 bp
Contigs: 119
Largest Contig: 174,422 bp
Assembly Length: 3,341,153 bp
Ambiguous Assembly Fraction: 0.0%

Submitter comments

Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA

Automated checks

Complete

Last modified 3 months ago

Sample Metadata

BioSample entries

BioSample: SRS1945371

Date

Collection Date: 2014-07-11

Location

Lat Lon: 37.4965 N 122.1329 W

Toponym

Geo Loc Name: USA:South San Francisco, USA

Environment

Isolation Source: Site R2A soil

Gold Ecosystem Classification: Environmental | Terrestrial | Soil | Wetlands | Unclassified

Other

Not detected

Package

Ncbi Submission Package: Metagenome.environmental.1.0

Biosamplemodel: Metagenome or environmental

All retrieved samples

SRS1945371: Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_D1_MG

Metadata retrieved 3 months ago

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