Humimonas hydrogenitrophica^Ts

Citation

Formal styling

Humimonas hydrogenitrophica^Ts Aldeguer-Riquelme et al., 2023

Effective publication

Aldeguer-Riquelme et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:0hkazsoc (validated)

Canonical URL

https://seqco.de/i:23799 CopyCopied to the clipboard

Nomenclature

Rank

Species

Syllabication

hy.dro.ge.ni.tro.phi'ca

Etymology

N.L. neut. n. hydrogenum, hydrogen; Gr. masc. adj. trophikos, nursing, tending or feeding; N.L. fem. adj. hydrogenitrophica, feeding on hydrogen, referring to the ability of the micro-organism to grow with H2/CO2 as energy source

Nomenclatural type

NCBI Assembly: GCA_947581615.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Classification

Bacteria » Gemmatimonadota » Gemmatimonadetes » Palauibacterales » Palauibacteraceae » Humimonas » Humimonas hydrogenitrophica^Ts

Parent

Humimonas gtdb

Genomics

Accession

NCBI Assembly:GCA_947581615.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.7%
• Contamination: 3.3%
• Quality: 80.2

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 0 23S rRNAs
• tRNAs for 20 amino acids

Source

• SRA: SRR5210316

Other features

• G+C Content: 71.38%
• Coding Density: 91.82%
• Codon Table: 11
• N50: 52,189 bp
• Contigs: 119
• Largest Contig: 174,422 bp
• Assembly Length: 3,341,153 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

 Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA 

Automated checks

Complete

See additional details

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Last modified 6 months ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_947581615.1
• GTDB Tree: s__Humimonas hydrogenitrophica
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Humimonas hydrogenitrophica

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified over 1 year ago
• Submission process status
• Quality checks before valid publication

Registered by

Aldeguer-Riquelme, Borja, created over 2 years ago

Submitted by

Aldeguer-Riquelme, Borja about 2 years ago

Curators

• Rodriguez-R, Luis M
• Chuvochina, Maria

Endorsed by

Chuvochina, Maria about 2 years ago

Validated by

Chuvochina, Maria almost 2 years ago

Date of priority

2023-06-23 07:38 AM (UTC)