Genome sc|0000268


Database

NCBI Assembly

Accession

GCA_947581815.1

Genomics

Accession
NCBI Assembly:GCA_947581815.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.05%
  • Contamination: 4.4%
  • Quality: 73.05
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 6 amino acids
Source
Other features
  • G+C Content: 63.62%
  • Coding Density: 92.17%
  • Codon Table: 11
  • N50: 16,543 bp
  • Contigs: 179
  • Largest Contig: 115,386 bp
  • Assembly Length: 2,385,795 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
 Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA 
Automated checks
Complete

Last modified 8 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2021-02
Location
Lat Lon: 37.9142 S 49.2831 E
Toponym
Geo Loc Name: Indian Ocean
Environment
Isolation Source: Deep-sea sediment
Other
Not detected
Package
Biosamplemodel: Metagenome or environmental
All retrieved samples

Metadata retrieved 8 days ago

Sequencing Experiments

SRR22177935


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license