SeqCode Registry
cognitis nomina
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Genomes
sc|0000268
JSON
Genome sc|0000268
Name
Indicimonas acetifermentans
Ts
Database
NCBI Assembly
Accession
GCA_947581815.1
Genomics
Accession
NCBI Assembly:
GCA_947581815.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
95.05%
Contamination:
4.4%
Quality:
73.05
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 6 amino acids
Source
SRA: SRR22177935
Other features
G+C Content:
63.62%
Coding Density:
92.17%
Codon Table:
11
N50:
16,543 bp
Contigs:
179
Largest Contig:
115,386 bp
Assembly Length:
2,385,795 bp
Ambiguous Assembly Fraction:
0.0%
Submitter comments
Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA
Automated checks
Complete
Last modified
4 months ago
Sample Metadata
BioSample entries
BioSample: SRS15656804
Date
Collection Date:
2021-02
Location
Lat Lon:
37° 54′ 51″ S, 49° 16′ 59″ E
View sampling location map
Toponym
Geo Loc Name:
Indian Ocean
Environment
Isolation Source:
Deep-sea sediment
Other
Not detected
Package
Biosamplemodel:
Metagenome or environmental
All retrieved samples
SRS15656804
: TVG05
Metadata retrieved
4 months ago
© 2022-2025 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
Sampling location
×
SRS15656804
×
Metadata retrieved using the EBI API via SRR22177935 (linked through the EBI API)
BioSample Accession(s)
SRS15656804
collection_date
2021-02
ENA-FIRST-PUBLIC
2022-11-04
organism
marine metagenome
ENA-LAST-UPDATE
2022-11-04
BioSampleModel
Metagenome or environmental
geo_loc_name
Indian Ocean
lat_lon
37.9142 S 49.2831 E
isolation_source
Deep-sea sediment
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