Indicimonas acetifermentans^Ts

Citation

Formal styling

Indicimonas acetifermentans^Ts Aldeguer-Riquelme et al., 2023

Effective publication

Aldeguer-Riquelme et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:0hkazsoc (validated)

Canonical URL

https://seqco.de/i:23801

Nomenclature

Rank

Species

Syllabication

a.ce.ti.fer.men'tans

Etymology

N.L. neut. n. acetum, vinegar; L. part. adj. fermentans, fermenting; N.L. fem. part. adj. acetifermentans, vinegar or acetic acid fermenting bacteria

Nomenclatural type

NCBI Assembly: GCA_947581815.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Classification

Bacteria » Gemmatimonadota » Gemmatimonadetes » Palauibacterales » Palauibacteraceae » Indicimonas » Indicimonas acetifermentans^Ts

Parent

Indicimonas gtdb

Genomics

Accession

NCBI Assembly:GCA_947581815.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 95.05%
• Contamination: 4.4%
• Quality: 73.05

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 6 amino acids

Source

• SRA: SRR22177935

Other features

• G+C Content: 63.62%
• Coding Density: 92.17%
• Codon Table: 11
• N50: 16,543 bp
• Contigs: 179
• Largest Contig: 115,386 bp
• Assembly Length: 2,385,795 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

 Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA 

Automated checks

Complete

See additional details

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Last modified 8 days ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_947581815.1
• GTDB Tree: s__Indicimonas acetifermentans
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Indicimonas acetifermentans (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 10 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Aldeguer-Riquelme, Borja about 2 years ago

Submitted by

Aldeguer-Riquelme, Borja almost 2 years ago

Curators

• Rodriguez-R, Luis M
• Chuvochina, Maria

Endorsed by

Chuvochina, Maria over 1 year ago

Validated by

Chuvochina, Maria over 1 year ago

Date of priority

2023-06-23 07:38 AM (UTC)