Genome sc|0002754


Database

NCBI Assembly

Accession

GCA_016707175.1

Genomics

Accession
NCBI Assembly:GCA_016707175.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.52%
  • Contamination: 1.35%
  • Quality: 90.77
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
15.604284 ×
Source
Other features
  • G+C Content: 69.48%
  • Coding Density: 90.13%
  • Codon Table: 11
  • N50: 622,782 bp
  • Contigs: 21
  • Largest Contig: 973,092 bp
  • Assembly Length: 3,909,549 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
The binning in this project followed the mmlong v0.1.2 hybrid-metaflowpipeline after the assembly step. Metagenome contigs were translated into proteins using FragGeneScan v1.31, annotated taxonomically using Kaiju v1.6.0 against the proGenomes database (2017-05-16). DASTool v1.1.1 --search_engine diamond was used to dereplicate and select for the best representative bin. The dereplicated bins in the analysis were checked for completeness and contamination using CheckM --lineage_wf v1.0.11. 
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2018-08-28
Location
Lat Lon: 56.21314 N 10.242467 E
Toponym
Geo Loc Name: Denmark: Ega
Environment
Sample Type: metagenomic assembly
Isolation Source: activated sludge from Ega_18-Q3-R5-49 • activated sludge from wastewater treatment plant
Env Broad Scale: aquatic biome [ENVO:00002030]
Env Local Scale: Waste Water [ENVO:00002001]
Env Medium: Activated Sludge [ENVO:00002046]
Other
Depth: 1m
Package
Ncbi Submission Package: MIMAG.wastewater.5.0MIMS.me.wastewater.6.0
Biosamplemodel: MIMAG.wastewater • MIGS/MIMS/MIMARKS.wastewater
All retrieved samples

Metadata retrieved about 2 months ago


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