Genome sc|0002755

Genomics

Accession

NCBI Assembly:GCA_016704565.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 95.36%
• Contamination: 0.81%
• Quality: 91.31

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

58.049706 ×

Source

• BioSample: SAMN16425541
• BioSample: SAMN14825669

Other features

• G+C Content: 69.33%
• Coding Density: 90.64%
• Codon Table: 11
• N50: 981,233 bp
• Contigs: 5
• Largest Contig: 1,389,971 bp
• Assembly Length: 3,605,160 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

The binning in this project followed the mmlong v0.1.2 hybrid-metaflowpipeline after the assembly step. Metagenome contigs were translated into proteins using FragGeneScan v1.31, annotated taxonomically using Kaiju v1.6.0 against the proGenomes database (2017-05-16). DASTool v1.1.1 --search_engine diamond was used to dereplicate and select for the best representative bin. The dereplicated bins in the analysis were checked for completeness and contamination using CheckM --lineage_wf v1.0.11. 

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2018-08-29

Location

Lat Lon: 57.049513 N 9.864788 E

Toponym

Geo Loc Name: Denmark: Aalborg W

Environment

Sample Type: metagenomic assembly

Isolation Source: activated sludge from AalW_18-Q3-R10-53 • activated sludge

Env Broad Scale: aquatic biome [ENVO:00002030]

Env Local Scale: Waste Water [ENVO:00002001]

Env Medium: Activated Sludge [ENVO:00002046]

Other

Depth: 1m

Package

Ncbi Submission Package: MIMAG.wastewater.5.0 • MIMS.me.wastewater.5.0

Biosamplemodel: MIMAG.wastewater • MIGS/MIMS/MIMARKS.wastewater

All retrieved samples

• SAMN16425541: MIMAG Metagenome-assembled Genome sample from Actinomycetales bacterium
• SAMN14825669: MIMS Environmental/Metagenome sample from activated sludge metagenome

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Metadata retrieved about 2 months ago