Genome sc|0003072


Database

NCBI Assembly

Accession

GCA_016464725.1

Genomics

Accession
NCBI Assembly:GCA_016464725.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.83%
  • Contamination: 0.77%
  • Quality: 88.98
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 48.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
14.0 ×
Source
Other features
  • G+C Content: 66.5%
  • Coding Density: 89.45%
  • Codon Table: 11
  • N50: 148,416 bp
  • Contigs: 40
  • Largest Contig: 352,400 bp
  • Assembly Length: 3,101,761 bp
  • Ambiguous Assembly Fraction: 0.00097%
Submitter comments
Completeness estimated with CheckM2
Automated checks
Complete

Last modified 15 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2005
Location
Lat Lon: Not collected
Toponym
Geo Loc Name: Antarctica: Mitchell Peninsula
Environment
Sample Type: metagenomic assembly
Isolation Source: soil • Antarctic soil
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0Metagenome.environmental.1.0
Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental
All retrieved samples

Metadata retrieved 15 days ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license