Genome sc|0003076

Name

Tyrphobacter aquilonaris^Ts

Database

NCBI Assembly

Accession

GCA_003133745.1

Genomics

Accession

NCBI Assembly:GCA_003133745.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

Completeness: 93.17%
Contamination: 0.03%
Quality: 93.02

Ribosomal and transfer RNA genes

1 16S rRNA (up to 56.0%)
0 23S rRNAs
tRNAs for 19 amino acids

Sequencing depth

25.5 ×

Source

Other features

G+C Content: 64.5%
Coding Density: 93.84%
Codon Table: 11
N50: 56,983 bp
Contigs: 82
Largest Contig: 160,237 bp
Assembly Length: 2,275,955 bp
Ambiguous Assembly Fraction: 0.063%

Automated checks

Complete

Last modified over 1 year ago

Sample Metadata

BioSample entries

Date

Collection Date: 2012-05-03

Location

Lat Lon: 68° 21′ 13″ N, 19° 2′ 50″ E

View map of sampling locations

Toponym

Geo Loc Name: Sweden: Stordalen Mire • Sweden: Stordalen mire

Environment

Env Material: soil

Sample Type: metagenomic assembly

Env Biome: permafrost

Isolation Source: permafrost active layer soil

Other

Depth: 0.2-0.25

Package

Ncbi Submission Package: Microbe.1.0 • MIMS.me.soil.5.0

Biosamplemodel: Microbe, viral or environmental • MIGS/MIMS/MIMARKS.soil

All retrieved samples

Metadata retrieved over 1 year ago

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