Tyrphobacter aquilonaris^Ts

Citation

Formal styling

Tyrphobacter aquilonaris^Ts Ji et al., 2021 (valid 2024)

Effective publication

Ji et al., 2021

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:tgimo_87 (validated)

Canonical URL

https://seqco.de/i:43739

Nomenclature

Rank

Species

Syllabication

aqui.lo.na'ris

Etymology

L. masc. adj. aquilonaris, northern, northernly

Nomenclatural type

NCBI Assembly: GCA_003133745.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Obligate heterotroph. Organic substrates include peptides, amino acids, carboxylates, methanol, poly- and oligosaccharides, sugars. PHA storage. Polyphosphate storage. Also defined based on ANI, and phylogenies of 16S rRNA gene, 15 ribosomal proteins, and the GTDB.

Classification

Bacteria » Eremiobacterota » Eremiobacteria » “Baltobacterales” » “Baltobacteraceae” » Tyrphobacter » Tyrphobacter aquilonaris^Ts

Parent

Tyrphobacter gtdb

Genomics

Accession

NCBI Assembly:GCA_003133745.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 93.17%
• Contamination: 0.03%
• Quality: 93.02

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 56.0%)
• 0 23S rRNAs
• tRNAs for 19 amino acids

Sequencing depth

25.5 ×

Source

• BioSample: SAMN08179405
• BioSample: SAMN07124983

Other features

• G+C Content: 64.5%
• Coding Density: 93.84%
• Codon Table: 11
• N50: 56,983 bp
• Contigs: 82
• Largest Contig: 160,237 bp
• Assembly Length: 2,275,955 bp
• Ambiguous Assembly Fraction: 0.063%

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_003133745.1
• GTDB Tree: s__Tyrphobacter aquilonaris
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Tyrphobacter aquilonaris (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 11 days ago
• Submission process status
• Quality checks before valid publication

Registered by

Ferrari, Belinda 3 months ago

Submitted by

Ferrari, Belinda 2 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Palmer, Marike 11 days ago

Date of priority

2024-10-17 12:47 AM (UTC)