Genome sc|0003078


Database

NCBI Assembly

Accession

GCA_003134965.1

Genomics

Accession
NCBI Assembly:GCA_003134965.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.86%
  • Contamination: 0.05%
  • Quality: 96.61
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 40.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
175.0 ×
Source
Other features
  • G+C Content: 67.5%
  • Coding Density: 92.53%
  • Codon Table: 11
  • N50: 1,005,564 bp
  • Contigs: 7
  • Largest Contig: 1,929,557 bp
  • Assembly Length: 4,429,191 bp
  • Ambiguous Assembly Fraction: 0.0015%
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2011-10-16
Location
Lat Lon: 68.3535 N 19.0471 E
Toponym
Geo Loc Name: Sweden: Stordalen Mire • Sweden: Stordalen mire
Environment
Env Material: soil
Sample Type: metagenomic assembly
Env Biome: permafrost
Isolation Source: permafrost active layer soil
Other
Depth: 0.45-0.48
Package
Ncbi Submission Package: Microbe.1.0MIMS.me.soil.5.0
Biosamplemodel: Microbe, viral or environmental • MIGS/MIMS/MIMARKS.soil
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

metagenome of peat: 20111000_P3D


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